Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60605g00002 ATGGATAAATTTCTGAATGACATTGAAAAGGACAAGCCATTTAGGTTCACTACTCAACAGTTAAGGATTGTAACTGATAACTTCTCTTACTTACTGGGATCAGGAGGTTTTGGATCAGTATACAAAGGAGTTTTCAGTGATGGAACCATTGTTGCTGTGAAGGTTCTGTTTAGAAGTTCTGACAAAGGAATCCAACAACAGTTCATAGCTGAAATTGGAACTTTAGGTAAAGTTCACCATTTCAACTTAGTTAGACTCTTTGGATTTTGTGTGGAGAAGAATTTCATTGCAATAGTTTATGAGTACATGGGAAATGGCTCTCTTGACAAGTATTTGTTCAAACAAGTTAAGACTTTGGGATTTGAAAAGCTTCATGAGATAGCGGTTGGAACAGCAAGAGGCATTGCTTATTTGCATGAAGAGTGTCAGCAAAGAATAATCCACTATGACATTAAGCCGGCCAATATTCTCTTGGACATGAATTTCAATCCTAAGGTTGCTGATTTCGGATTGGCAAAGCTTTGTAACAGGGATAATACTCATATATCCATGACGGGAGGCAGGGGAACCCCCGGTTATGCCGCGCCGGAGCTTTGGATGCCGTTCCCGGTGACTCACAAGTGCGATGTTTATAGCTTTGGGATGTTGTTGTTTGAAATCATTGGTGGGAGAAGAAATGTTGATACTAATGTTCCGGAAAGCCAAGAGTGGTTTCCAATGTGGGTTTGGAAAAATTTTGATGGGGGAGAGTTACAAGAGTCAACATTAGTGTGTGAATTATTGGAGGAGGAACATAAGGTGATGGTAGAAAGAATGATGAAGGTAGCTTTGTGGTGTGTTCAGTATAGGCCTGAATCAAGGCCTATGATGAGTGCTGTTGTCAAAATGTTGGAAGGCAATGAAGAGATTCCACAACCTCTGAATCCATTTCAATATTTGATGGACAATGGTTTTGGTGCTCTTCCACACCAAGATTCATTGAATACTACCCGCAATGGCACAAGTGCAACTACAAGTAGCTATTGTGACTCTTCTGTGATTGATGTGGAGTCCAATAATATTGTAACTGCTGATACTGATCCAGTTCAGAGGGAGTATGAAGCTGAGCTACCTTCAGTAAGGACTGAATGA 1131 0.4041 MDKFLNDIEKDKPFRFTTQQLRIVTDNFSYLLGSGGFGSVYKGVFSDGTIVAVKVLFRSSDKGIQQQFIAEIGTLGKVHHFNLVRLFGFCVEKNFIAIVYEYMGNGSLDKYLFKQVKTLGFEKLHEIAVGTARGIAYLHEECQQRIIHYDIKPANILLDMNFNPKVADFGLAKLCNRDNTHISMTGGRGTPGYAAPELWMPFPVTHKCDVYSFGMLLFEIIGGRRNVDTNVPESQEWFPMWVWKNFDGGELQESTLVCELLEEEHKVMVERMMKVALWCVQYRPESRPMMSAVVKMLEGNEEIPQPLNPFQYLMDNGFGALPHQDSLNTTRNGTSATTSSYCDSSVIDVESNNIVTADTDPVQREYEAELPSVRTE 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60605g00002 376 CDD STKc_IRAK 32 299 - -
Stsc60605g00002 376 Gene3D Transferase(Phosphotransferase) domain 1 103 306 - -
Stsc60605g00002 376 FunFam PR5-like receptor kinase 103 306 - -
Stsc60605g00002 376 Gene3D Phosphorylase Kinase; domain 1 3 102 - -
Stsc60605g00002 376 ProSitePatterns Protein kinases ATP-binding region signature. 32 54 IPR017441 GO:0005524
Stsc60605g00002 376 ProSitePatterns Serine/Threonine protein kinases active-site signature. 146 158 IPR008271 GO:0004672|GO:0006468
Stsc60605g00002 376 ProSiteProfiles Protein kinase domain profile. 26 303 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60605g00002 376 SMART serkin_6 26 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60605g00002 376 Pfam Protein kinase domain 31 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60605g00002 376 SUPERFAMILY Protein kinase-like (PK-like) 11 298 IPR011009 -
Stsc60605g00002 376 PANTHER OS07G0415500 PROTEIN 4 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60605g00002 Stsc-Chr60605 37319 38577 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60605g00002 15 312 Receptor kinase-like Gene Family AT5G38280 44.118 1.38e-82 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Stsc60605g00002 Pkinase 4.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60605g00002 - - gmx:100803355 531.176