Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60603g00020 ATGGCGCTCCATATTTTTTGTGGATTTTTTCTTACCACCACCTTTGTTTTCATGCAAACACTGGCGGATACTTCTTCATGCACCGATTGTTTTGTAAATTCAAGGGCAACATATTACCCCCATTCTGAACAAAATGGGACAGCCAATGGTGCATGCGGCTTTGGCTCCTTTGGTGCTTTGGTGAACGGCGGTGACGTATCAGCCGCATCTAGTCTTTATCGAAATGGCGTTGGCTGTGGCGCCTGTTATCAGGTGAGGTGTACGGAGAGTGAGTATTGCTCGGATAACGGTGTGATTGTAGTAATAACAGACCAAGGATCAAGTGATAACACTGATTTCATTCTCAGTGAACATGCCTTTGATAGGATGGCTCAGACCACTGATGCAGCTTCTTATCTCTTAGCCCTTGGCGTTCTTGATATTCAGTATAGACGTGTTGCATGCAGTTATCCACATGAGAACATAACATTCAAGATAGATGAGAGTAGCAGCAACCCTAATTATTTGGCTTTTGTGATTTGGTATCAACAAGGAATCAGAGACATAACTGCTGTTCAGCTTTGTGAGACCGAGAACTTTGAGTGCAAGCTGCTAGATCGGAGTCATGGTGCAGTGTGGAGTAGCATCTCTCCTCCAAGTGGACCATTGTCTATAAGAATGTTGTTTAGTGATGAAGATGAGGAGAATGAAGAATGGGTTGTTCCTCCTAATAACTTACCTGCAGATTGGAAGGCTGGTCAAACATACGATTCAGGGATACAAGTTAATTAA 771 0.4332 MALHIFCGFFLTTTFVFMQTLADTSSCTDCFVNSRATYYPHSEQNGTANGACGFGSFGALVNGGDVSAASSLYRNGVGCGACYQVRCTESEYCSDNGVIVVITDQGSSDNTDFILSEHAFDRMAQTTDAASYLLALGVLDIQYRRVACSYPHENITFKIDESSSNPNYLAFVIWYQQGIRDITAVQLCETENFECKLLDRSHGAVWSSISPPSGPLSIRMLFSDEDEENEEWVVPPNNLPADWKAGQTYDSGIQVN 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60603g00020 256 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 167 251 IPR007117 -
Stsc60603g00020 256 Gene3D - 151 255 IPR036749 -
Stsc60603g00020 256 PANTHER EXPANSIN-B3 24 254 - -
Stsc60603g00020 256 Pfam Expansin C-terminal domain 155 226 IPR007117 -
Stsc60603g00020 256 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 49 153 IPR007112 -
Stsc60603g00020 256 Pfam Lytic transglycolase 69 143 IPR009009 -
Stsc60603g00020 256 SUPERFAMILY PHL pollen allergen 154 251 IPR036749 -
Stsc60603g00020 256 CDD DPBB_EXLB_N 32 148 - -
Stsc60603g00020 256 Gene3D - 17 149 IPR036908 -
Stsc60603g00020 256 PRINTS Expansin/Lol pI family signature 136 152 IPR007118 GO:0005576
Stsc60603g00020 256 PRINTS Expansin/Lol pI family signature 30 45 IPR007118 GO:0005576
Stsc60603g00020 256 PRINTS Expansin/Lol pI family signature 69 87 IPR007118 GO:0005576
Stsc60603g00020 256 PRINTS Expansin/Lol pI family signature 237 251 IPR007118 GO:0005576
Stsc60603g00020 256 SUPERFAMILY Barwin-like endoglucanases 20 152 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60603g00020 Stsc-Chr60603 67597 70022 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60603g00020 11 253 Expansin Gene Family AT4G17030 43.852 1.50e-64 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60603g00020 - - gmx:100794009 421.009