Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60603g00019 ATGGCGCTCCATATTTTTTGTGGATTTTTTCTTACCACCACCTTTGTTTTCATGCAAACACTGGCGGATACTTCTTCATGCACCGATTGTTTTGTAAATTCAAGGGCAACATATTACCCCCATTCTGAACAAAATGGGACAGCCAATGGTGCATGCGGCTTTGGCTCCTTTGGTGCTTTGGTGAACGGCGGTGACGTATCAGCCGCATCTAGTCTTTATCGAAATGGCGTTGGCTGTGGCGCCTGTTATCAGGTGAGGTGTACGGAGAGTGAGTATTGCTCGGATAACGGTGTGATTGTAGTAATAACAGACCAAGGATCAAGTGATAACACTGATTTCATTCTCAGTGAACATGCCTTTGATAGGATGGCTCAGACCACTGATGCAGCTTCTTATCTCTTAGCCCTTGGCGTTCTTGATATTCAGTATAGACGTGTTGCATGCAGTTATCCACATGAGAACATAACATTCAAGATAGATGAGAGTAGCAGCAACCCTAATTATTTGGCTTTTGTGATTTGGTATCAACAAGGAATCAGAGACATAACTGCTGTTCAGCTTTGTGAGGTATATACTCTCTCTACCAATTAA 591 0.4298 MALHIFCGFFLTTTFVFMQTLADTSSCTDCFVNSRATYYPHSEQNGTANGACGFGSFGALVNGGDVSAASSLYRNGVGCGACYQVRCTESEYCSDNGVIVVITDQGSSDNTDFILSEHAFDRMAQTTDAASYLLALGVLDIQYRRVACSYPHENITFKIDESSSNPNYLAFVIWYQQGIRDITAVQLCEVYTLSTN 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60603g00019 196 Gene3D - 16 148 IPR036908 -
Stsc60603g00019 196 PRINTS Expansin/Lol pI family signature 69 87 IPR007118 GO:0005576
Stsc60603g00019 196 PRINTS Expansin/Lol pI family signature 136 152 IPR007118 GO:0005576
Stsc60603g00019 196 PRINTS Expansin/Lol pI family signature 30 45 IPR007118 GO:0005576
Stsc60603g00019 196 PANTHER EXPANSIN-B3 23 189 - -
Stsc60603g00019 196 Pfam Lytic transglycolase 69 143 IPR009009 -
Stsc60603g00019 196 SUPERFAMILY Barwin-like endoglucanases 20 152 IPR036908 -
Stsc60603g00019 196 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 49 153 IPR007112 -
Stsc60603g00019 196 CDD DPBB_EXLB_N 32 148 - -
Stsc60603g00019 196 Gene3D - 149 195 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60603g00019 Stsc-Chr60603 67597 70022 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60603g00019 11 189 Expansin Gene Family AT4G17030 45.000 4.35e-49 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60603g00019 - - ccaj:109799868 315.849