Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60603g00011 ATGGTTTGCACTGCCAATGATTTACATGGTTGGAAGGACTTCCCAAAGGGTCTTAGAATTCTTCTCCTTGAAAGAGACAGCACTTCTGCTTCTGAGATAAGAGCCAAGCTTGAGGCCATGGACTATCATGTTTCTACCTTCTATGATGAGAATGAAGCCTTGTCAGAAATTTCAAATAGACTCGAAGTATTCCATGTTGCCATTGTAGAGGTCAGTACAAGCAGCAGACAGTGTGGTTTTAAATTTCTTGAGAATGCCAAGGACTTGCCAACCATCATGACTTCGGATAATCAGTGCCTTAGCACTATGATGAAGTGCATTGCGCTTGGTGCTGTTGAATTCCTATGTAAACCACTTTCTGAGGACAAACTCAGAAATATCTGGCAGCATGTGGTTCATAAGGCATTCAATGCTGGGGCAAGTGCCTTGTCCGAATCACTAAAACCGGTTAAAGAGTCTGTAGAATCCATAGTTCAGCTCCAAACAGATAATGGAAGGCATGATAGTAGAATTTCCATTGATTTAGAGAATATATCAAGGTCTAGTGATAATGACCGCGAGCAGTCTGCTGGAAGTGATAAATATCCAGCTCCTTCAACACCACAATTAAAGCAGGGAGCAAGGTTGCTGGATGATGGTGATTGCCAAGAGCATACGAATTGCTCGAATGAGAAAGAAAGTGGGGAACATGAAGGGGAATCTAAATCTGTCGAAACATCAAGTGAGAATTTGAATGAAGGTACACAACCACAGAAACCTGAAAGGGGTCTAATTAAACAGGAAGAGGATTTTGGTGCCAATGGTTCCAATGGCGAAAGTAAAGTTTCTCCGAATCCTCATGATAGAAGGCCTCTCAGCAGCACTGATGGCAATGTTACATCTTCAAATAAAGCAGTGGTTCTTAGTGATACATGTGAAAACAAAGCTACTCGGAAGAAGTTGAAAGTAGAGTGGACGACCGAGTTGCACAAAAAGTTTGTGCAAGCAGTGGAACAACTAGGAGTTGATCAAGCCATTCCTTCTCGCGTTCTTGAGCTGATGAAAGTGGAGGGCTTGACAAGACATAATGTGGCAAGCCATCTTCAGAAATATAGACTACACAAGAGACAAATGATGCCCAGGGAAGCAGATCAAAGATGGCAAAATCATAGAGATTCGGTGCGCCTGAAAAGACCAATTATGGCCTATCCTCCACATCATTATAACCATGGCCTGCCTCCACCACCTGTATATCCAATGTGGGGACAAACCGGCAGCCAAACAACCAATCCACAGTTTTGGGGACCTCCTGGTTATACCTGGTGGCGGCCTACAGAAAGTTGGCACTGGAATCCTTTTCCGGGGGTGCATGTTGATGCATGGGGCTGCCCAGTGTTGCCAGCCACTCAAGCTCCTTACCTTTCCTACACTCAACATATGGCTGGATTCCACATCAATGGTAAATCGCCGGATTATAGATACAGCATGCCACCAAGTTCATTTGAGCATTATCCGGCAGATGAAGTTGTTGACAAAGTTGTAAAGGAAGCTATAAGCAAGCCATGGCTACCGTTACCGTTGGGCCTTAAGCCTCCTTCCACCGACAGCGTCTTGGCCGAGCTCTCCAGGCAAGGCATATCCCCCATGCCTCATTGCTCCAAGGGCTCTAAACCTAGATAG 1659 0.4491 MVCTANDLHGWKDFPKGLRILLLERDSTSASEIRAKLEAMDYHVSTFYDENEALSEISNRLEVFHVAIVEVSTSSRQCGFKFLENAKDLPTIMTSDNQCLSTMMKCIALGAVEFLCKPLSEDKLRNIWQHVVHKAFNAGASALSESLKPVKESVESIVQLQTDNGRHDSRISIDLENISRSSDNDREQSAGSDKYPAPSTPQLKQGARLLDDGDCQEHTNCSNEKESGEHEGESKSVETSSENLNEGTQPQKPERGLIKQEEDFGANGSNGESKVSPNPHDRRPLSSTDGNVTSSNKAVVLSDTCENKATRKKLKVEWTTELHKKFVQAVEQLGVDQAIPSRVLELMKVEGLTRHNVASHLQKYRLHKRQMMPREADQRWQNHRDSVRLKRPIMAYPPHHYNHGLPPPPVYPMWGQTGSQTTNPQFWGPPGYTWWRPTESWHWNPFPGVHVDAWGCPVLPATQAPYLSYTQHMAGFHINGKSPDYRYSMPPSSFEHYPADEVVDKVVKEAISKPWLPLPLGLKPPSTDSVLAELSRQGISPMPHCSKGSKPR 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60603g00011 552 NCBIfam myb-like DNA-binding domain, SHAQKYF class 313 368 IPR006447 GO:0003677
Stsc60603g00011 552 SUPERFAMILY CheY-like 16 134 IPR011006 -
Stsc60603g00011 552 Gene3D - 15 135 - -
Stsc60603g00011 552 MobiDBLite consensus disorder prediction 266 295 - -
Stsc60603g00011 552 Gene3D - 309 371 - -
Stsc60603g00011 552 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 544 IPR044825 GO:0003700|GO:0045893
Stsc60603g00011 552 MobiDBLite consensus disorder prediction 210 237 - -
Stsc60603g00011 552 SUPERFAMILY Homeodomain-like 311 370 IPR009057 -
Stsc60603g00011 552 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 310 369 IPR017930 -
Stsc60603g00011 552 FunFam Two-component response regulator 309 372 - -
Stsc60603g00011 552 Pfam Myb-like DNA-binding domain 315 365 IPR001005 -
Stsc60603g00011 552 MobiDBLite consensus disorder prediction 168 295 - -
Stsc60603g00011 552 MobiDBLite consensus disorder prediction 527 552 - -
Stsc60603g00011 552 FunFam Two-component response regulator-like APRR2 17 142 - -
Stsc60603g00011 552 MobiDBLite consensus disorder prediction 168 190 - -
Stsc60603g00011 552 ProSiteProfiles Response regulatory domain profile. 19 132 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60603g00011 Stsc-Chr60603 36942 42501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60603g00011 1 546 Response Regulator Gene Family AT4G18020 48.962 6.33e-141 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Stsc60603g00011 Myb_DNA-binding 1.5e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60603g00011 - - ahf:112747948 988.408