Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60601g00009 ATGGGTAGTGTCGACATGGTGAGTTCATCAGAAGAAGCATTGATATCCAAAATATGCCATCTCTATACAGAAATAGCGAGTCTAGACTCTCTGAAACCCTGCAAGAATGTGGACACGCTATTCACAGAGCTTGTCATGACATGCATACCACCATCCTCCATCGATGTCACAAACCTCTCAAACAACCTCCAAGAGATAAGGTCACACCTCATTAGGCTCTGTGGAATAGCAGAGGGACATTTGGAACACCACTATTCCACCATCCTTGGCTCCTACGATAACCCTCTCCACCATCTCCATCTCTTCCCTTACTACAACAACTACCTCCAACTCTCTCTTCTTGAATTCACAATCCTCTCCCAACACTCCCATCTCCCTCACAAGATTGCCTTCATTGGCTCTGGTCCTCTTCCTCTCACTTCCATTGTTCTTGCATCCAACCACCTCCCTTCAACCACCTTCCACAACTATGACATCGACGCTTCCGCCAACTCCAGCGCCATGCGCTTGGTTTCAGGTGATCCTGACTTGTCGAAGCGCATGGAGTTTCACACCAGTGACATACTGGATGTGACTTGCTTGGAGGAGTTTGAAGTTGTGTACTTGGCAGCACTTGTGGGAATGGAGAAGGAAGAAAAGAACCGAGTGATTGATCACTTGGCAAAGCACATGGCACCTGGTGCTGTTCTTATGCTGAGGAGTGCTCATGGTGCTCGCGCTTTTCTTTACCCTGTTGTTGAAGCTTGTGATCTTAGAGGCTTTGAGGTTCTCTCTGTGTTCCACCCTACTGATGAGGTTGTCAATTCTGTTGTCATTGCTCGTAAATACCCTCTTTCTATGCTTGAACAACAACAAGGACTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTATGATATTACCCAATAAGTGCTCTGATGAGATTCATCAAGTCTTCAACCGCCCTCTCAATCATGGCAACATCATCATTGAGGAATTAGCCCTTGACGATCAACTCTGA 1029 0.4568 MGSVDMVSSSEEALISKICHLYTEIASLDSLKPCKNVDTLFTELVMTCIPPSSIDVTNLSNNLQEIRSHLIRLCGIAEGHLEHHYSTILGSYDNPLHHLHLFPYYNNYLQLSLLEFTILSQHSHLPHKIAFIGSGPLPLTSIVLASNHLPSTTFHNYDIDASANSSAMRLVSGDPDLSKRMEFHTSDILDVTCLEEFEVVYLAALVGMEKEEKNRVIDHLAKHMAPGAVLMLRSAHGARAFLYPVVEACDLRGFEVLSVFHPTDEVVNSVVIARKYPLSMLEQQQGLSSSSSSSSSSSSSSSSSSSSMILPNKCSDEIHQVFNRPLNHGNIIIEELALDDQL 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60601g00009 342 Gene3D Vaccinia Virus protein VP39 11 277 IPR029063 -
Stsc60601g00009 342 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 79 236 IPR029063 -
Stsc60601g00009 342 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 6 280 IPR004298 GO:0030410|GO:0030418
Stsc60601g00009 342 MobiDBLite consensus disorder prediction 287 310 - -
Stsc60601g00009 342 PANTHER NICOTIANAMINE SYNTHASE 3 8 292 IPR004298 GO:0030410|GO:0030418
Stsc60601g00009 342 Pfam Nicotianamine synthase protein 10 277 IPR004298 GO:0030410|GO:0030418
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60601g00009 Stsc-Chr60601 31313 32594 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60601g00009 6 275 Nicotianamine Synthase Gene Family AT1G56430 66.182 1.44e-132 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60601g00009 K05953 - gmx:100794250 465.307