Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60600g00009 ATGACTCAATCATTTGGTCAAACTGAGATCAACTGGGATAAGCTAGATAAAACTAAGTTCTATGTCATAGGAGCTGGCCTCTTTACCGGTGTTACGGTGGCACTCTTCCCGGTTTCTGTTGTCAAAACAAGGCTGCAGGTTGCTACAAGGGATTCCCTAGAGAAGAGTGCTTTCTCTGTTGCAAAAGGATTGCTTAAAACCGATGGTGTCCCTGGTTTTTATCGAGGGTTTGCCACGGTTTTCTCTTGTGCAATCCCTGCCAGGATCATATTCCTGACAGCTCTGGAAACCACAAAGTCAGCTTCCTTAAGAATGCTTGAACCATTGAAGCTATCTGAAACTACCCAGGCTGCCATTGCAAATGGAATTGCAGGCATGACATCGTCGCTTGTAGCTCAATCTGTATTTGTTCCCATGGATGTGGTTTGCCAAAAGTTGATGGTGCAAGGATACTCAGGCCATGCCCAGTATAGCGGGGGTTTGGATGTTGTTCGTAAGGTTTTAAAGACTGAAGGTGTCCGAGGACTATATCGAGGATTTGGTCTATCTGCCATTACTTATTCTCCTTCAAGTGCTGTATGGTGGGCAAGTTATGGTACAAGCCAACGCTTGATGTGGAAATTCTTGGGCCATGATAACCCTTCCGATGGAAACACTCCTAGTGTGCAAAAGGTTATGTTAGTTCAGGGTACCGGAGGGTTGATTGCTGGTGCCACTTCATCCTGTATTACAACCCCGTTGGATACTATCAAGACAAGATTACAGGTGACGGGACATGAACATAGAAGCTCTATAAAACAGGTTGCGAAAGATTTAATGAACGAAGATGGTTGGAAAGGCTTTTATAGAGGGTTTGGTCCGAGATTATTTAGCATGTCAATGTGGGGTACTTCAATGATATTGACATACGAGTACCTAAAGCGCGTGTGTATTAAAGATGAATAG 945 0.4413 MTQSFGQTEINWDKLDKTKFYVIGAGLFTGVTVALFPVSVVKTRLQVATRDSLEKSAFSVAKGLLKTDGVPGFYRGFATVFSCAIPARIIFLTALETTKSASLRMLEPLKLSETTQAAIANGIAGMTSSLVAQSVFVPMDVVCQKLMVQGYSGHAQYSGGLDVVRKVLKTEGVRGLYRGFGLSAITYSPSSAVWWASYGTSQRLMWKFLGHDNPSDGNTPSVQKVMLVQGTGGLIAGATSSCITTPLDTIKTRLQVTGHEHRSSIKQVAKDLMNEDGWKGFYRGFGPRLFSMSMWGTSMILTYEYLKRVCIKDE 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60600g00009 314 ProSiteProfiles Solute carrier (Solcar) repeat profile. 224 309 IPR018108 -
Stsc60600g00009 314 Gene3D Mitochondrial carrier domain 21 314 IPR023395 -
Stsc60600g00009 314 Pfam Mitochondrial carrier protein 118 207 IPR018108 -
Stsc60600g00009 314 Pfam Mitochondrial carrier protein 229 313 IPR018108 -
Stsc60600g00009 314 Pfam Mitochondrial carrier protein 26 101 IPR018108 -
Stsc60600g00009 314 ProSiteProfiles Solute carrier (Solcar) repeat profile. 116 204 IPR018108 -
Stsc60600g00009 314 PRINTS Mitochondrial carrier protein signature 33 47 IPR002067 GO:0055085
Stsc60600g00009 314 PRINTS Mitochondrial carrier protein signature 233 255 IPR002067 GO:0055085
Stsc60600g00009 314 PRINTS Mitochondrial carrier protein signature 177 195 IPR002067 GO:0055085
Stsc60600g00009 314 SUPERFAMILY Mitochondrial carrier 13 306 IPR023395 -
Stsc60600g00009 314 ProSiteProfiles Solute carrier (Solcar) repeat profile. 17 101 IPR018108 -
Stsc60600g00009 314 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 3 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60600g00009 Stsc-Chr60600 64902 67990 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60600g00009 10 314 Chloroplast and Mitochondria Gene Families AT5G15640 70.684 5.41e-162 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60600g00009 K15121 - gmx:100782750 528.094