Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60600g00007 ATGGCCTTCTTCTTCTCTTTCATGTCACACCACAAAGCTCTTCCCACTTGCCTTGTCTTCTTCTTCCTGCTTTCTTGCACCTCCTTCACTTCAACAGAAGCTTATGATGCACTTGACCCAAATGGAAACATCACAATCAAATGGGATATCATAAGCTGGACACCTGATGGTTATGTTGCTGTCGTTACGATGAACAACTTCCAACAATATCGGCATATTGCAGCACCTGGCTGGTCAATGGGATGGACATGGGCAAAGAAGGAGGTTATATGGAGCATGATGGGAGGGCAGACCACTGAACAAGGTGATTGTTCAAAGTTTAAGGGAAACCCTCCACATTGCTGTAAGAAGGATCCCACGGTTGTGGATTTACTTCCCGGCACACCTTACAACCAGCAAATTGCAAACTGCTGCAAAGGTGGGGTGCTTAGCTCATGGGCTCAGGATCCAACCAATGCAGTCGCATCGTTTCAAGTCAGTGTTGGTAGAGCTGGAACCACCAACAGAACTGTGAAAGTGCCAAAGAATTTCACCTTGAAAGCACCTGGTCCGGGGTATACTTGCGGTCCAGCAAAAATCGTGCCACCAACAAAGTTCATTCAATCAGACAAAAGAAGAGTGACTCAAGCACTCATGACATGGAATGTGACGTGCACATATTCGCAGTTTCTAGCCCAGAAAACTCCTACTTGCTGTGTCTCTCTCTCATCGTTCTATAACGATACTATTGTGCCCTGCCCAACATGTTCATGTGGCTGCCAGAGCAACTCATCTTGTGTAAATGCAAATACGCCACATTTGGCATCGGTCGTTTCTGGAAAGAATAACCTTGCTCCTTTAGTTCAATGTACTAGCCATATGTGTCCGGTTAGAGTCCACTGGCACGTTAAGCTTAACTACAAGGAGTACTGGCGTGTGAAGGTCACAATTACTAATTTCAATTACAGGATGAATTATTCAGAGTGGAACTTAGTTGTTCAACACCCGAACTTTGATAATCTGACTCAACTCTTCAGTTTCAACTACAAGTCATTAACTCCCTATGGTGATATAAATGATACTGCTATGCTTTGGGGAGTTAAGTTCTATAATGATTTTCTAAATGAAGCTGGGCCTAATGGTAATGTACAATCAGAGCTACTCTTCAGAAAGGATAAAGCAACTTTCACTTTCGAGAAGGGTTGGGCTTTCCCTCGAAGGATCTATTTCAATGGTGACAACTGCGTGATGCCACCACCTGATGCTTATCCATGGTTGCCTAATGCTGGTTCTCAAAAGGAGGTTTCCTTGCTTGTCTTAGTGTTGGCCTATTTGGTATCCTTGGTATTTTATGCATATGCTTGA 1344 0.439 MAFFFSFMSHHKALPTCLVFFFLLSCTSFTSTEAYDALDPNGNITIKWDIISWTPDGYVAVVTMNNFQQYRHIAAPGWSMGWTWAKKEVIWSMMGGQTTEQGDCSKFKGNPPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVLSSWAQDPTNAVASFQVSVGRAGTTNRTVKVPKNFTLKAPGPGYTCGPAKIVPPTKFIQSDKRRVTQALMTWNVTCTYSQFLAQKTPTCCVSLSSFYNDTIVPCPTCSCGCQSNSSCVNANTPHLASVVSGKNNLAPLVQCTSHMCPVRVHWHVKLNYKEYWRVKVTITNFNYRMNYSEWNLVVQHPNFDNLTQLFSFNYKSLTPYGDINDTAMLWGVKFYNDFLNEAGPNGNVQSELLFRKDKATFTFEKGWAFPRRIYFNGDNCVMPPPDAYPWLPNAGSQKEVSLLVLVLAYLVSLVFYAYA 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60600g00007 447 Pfam COBRA-like protein 58 221 IPR006918 GO:0010215|GO:0016020
Stsc60600g00007 447 PIRSF COBRA 6 447 IPR006918 GO:0010215|GO:0016020
Stsc60600g00007 447 PANTHER PROTEIN COBRA 23 436 IPR006918 GO:0010215|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60600g00007 Stsc-Chr60600 51652 54914 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60600g00007 18 445 COBRA Gene Family AT3G02210 74.654 0.0 693
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60600g00007 - - gmx:100783820 825.083