Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60600g00006 ATGAGGCTTGTCATAATACCTCTCTGTGTTATTGTTCTGTTCTCTTGTGCAGCTGCATATGATCCTTTGGATCCAAATGGAAACATAACAATCAAATGGGATGTTATGTCTTGGACACCAGATGGCTATGTGGCAGTGGTAACAATGAGCAATTTCCAAATGTTCCGGCACATCCCGAATCCCGGATGGACCCTAGGGTGGTCATGGGCTAAAAAAGAGGTTATATGGACCATGGTAGGAGCTCAAACTACAGAACAAGGAGATTGCTCTAAGTTCAAAGGCAATGTACCTCACTGCTGCAAGAAAACTCCCACAGTTGTAGACCTTCTCCCTGGTGTACCTTACAATCAGCAATACTCAAACTGCTGCAAGGGTGGAGTGGTATCAGCATGGGGCCAAGATCCTTCGTCCGCAGTCTCGGCCTTCCAAGTGAGTGTTGGACAAGCTGGCACCTCCAACAAGACAGTTAAACTCCCCAAGAACTTCACTCTCTTGGCTCCAGGACCTGGCTACACCTGTGTGACATGGAATGTTACCTGCACATACTCGCAATTTCTGGCTAGAAAGAACCCGAGTTGCTGCGTATCTTTGTCATCCTTCTACAATGAAACCATTACCCCTTGTCCTACTTGTGCCTGTGGTTGCCAGAACAAGAAGAATTGTGTCAAGAGTGACTCGAAATATCTGAAGACAGCAGGCGCTCACACTCCGAGGAGAGATAATGATGCATTGCTGCAGTGCACTCATCATATGTGCCCAATCAGGGTACACTGGCATGTGAAGCTCAACTACAAGGACTATTGGAGAGTCAAGATCGCCATAACGAACTTCAACTACAGAATGAATTACACCCTCTGGACTCTCGCTGTCCAGCATCCGAATCTCAACAATATCACCCAAGTTTTCAGCTTTGATTACAGGCCAATTCTTCCCTATGAGTCCATTAATGATACTGGTATGTTCTATGGCATGAAATTCTATAATGATCTACTAATGGAAGCTGGACCATCTGGGAATGTTCAATCCGAAGTGCTTCTTCGAAAGGATCAGGATACCTTCACGTTCAAGCAAGGATGGGCGTTTCCTCGCAAGGTTTACTTCAATGGTGAAGAATGCATGCTTCCACCACCTGATACCTACCCATTCCTCCCCAATGCAGCTCCTGTAAAGCTACTTAACCTACCATCACTCATTTTCTTCTTGCTTCTCTTGCTATCAGTTTAG 1224 0.4567 MRLVIIPLCVIVLFSCAAAYDPLDPNGNITIKWDVMSWTPDGYVAVVTMSNFQMFRHIPNPGWTLGWSWAKKEVIWTMVGAQTTEQGDCSKFKGNVPHCCKKTPTVVDLLPGVPYNQQYSNCCKGGVVSAWGQDPSSAVSAFQVSVGQAGTSNKTVKLPKNFTLLAPGPGYTCVTWNVTCTYSQFLARKNPSCCVSLSSFYNETITPCPTCACGCQNKKNCVKSDSKYLKTAGAHTPRRDNDALLQCTHHMCPIRVHWHVKLNYKDYWRVKIAITNFNYRMNYTLWTLAVQHPNLNNITQVFSFDYRPILPYESINDTGMFYGMKFYNDLLMEAGPSGNVQSEVLLRKDQDTFTFKQGWAFPRKVYFNGEECMLPPPDTYPFLPNAAPVKLLNLPSLIFFLLLLLSV 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60600g00006 407 PIRSF COBRA 174 407 IPR006918 GO:0010215|GO:0016020
Stsc60600g00006 407 PIRSF COBRA 1 175 IPR006918 GO:0010215|GO:0016020
Stsc60600g00006 407 PANTHER PROTEIN COBRA 175 401 IPR006918 GO:0010215|GO:0016020
Stsc60600g00006 407 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 16 - -
Stsc60600g00006 407 Pfam COBRA-like protein 43 188 IPR006918 GO:0010215|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60600g00006 Stsc-Chr60600 49216 51592 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60600g00006 1 404 COBRA Gene Family AT3G29810 60.092 0.0 566
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60600g00006 - - gmx:100783410 760.755