Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60600g00002 ATGGCTATGTTATTGGGAATCATTGGTGGGGTGGTGTTGGTGCTCTGTTTTTGCTCTGTTTTCTTGTTGAAGTGGAATGAAGTGAGGTACAGGAGGAAAGGGTTGCCACCTGGGACAATGGGGTGGCCTCTTTTTGGAGAAACCACTGAGTTTCTTAAGCAAGGTCCAAACTTCATGAAAAACCAGAGAACAAGGTATGGTAGTTTTTTCAAATCACACATACTTGGGTGTCCTACAATAGTGTCAATGGATCCAGAGCTGAACAGATTCATTCTGATGAATGAAGCAAAAGGGCTTGTTCCTGGTTACCCTCAATCCATGTTGGATATCTTAGGAAAATGCAATATTGCAGCTGTTCATGGCTCCACTCACAAGTACATGAGAGGTGCATTGTTATCCATCATTAGCCCTACTTTGATCAGAGATCAGCATCTCCCTAAGATTGATCACTTCATGAGATCTTTTCTCACTCATTGGGATACCAAAATCATCAACCTTCAAGACAAAACCAAAGAGATGGCATTTCTGTCTTCACTTAAGCAGATTGCTGGCATGGAATCTAGCTCAATATCTCATCCTTTCATGACAGAGTTCTTTAAGCTTGTTTTAGGAACACTCTCCTTGCCTATTGATCTTCCCGGCACAAATTATCGCCGCGGATTACAGGCAAGGAAGAACATAATTAGCATTCTGAGTGAGTTGCTGGATGAAAGGAAAGCATCCCAAGAAACACACCAAGACATGCTTGGTAGCTTGATGATGGGGAGAAGAGAAAACAGATACAAATTAACAGATGAAGAGATCATTGATCTCATCATCACAATCATGTATTCTGGTTATGAAACTGTTTCAACTACATCAATGATGGCAGTGAAGTACCTCCATGATCATCCCAAAGTTCTTGAAGAAATGAGAAATGAGCATTTTGCTATAAGAGAGAGGAAGAAGCCTGAGGATCCAATTGATTGTAATGATCTTAAGTCAATGAGGTTCACTCGTGCGGTAATTTTTGAGACCTCGAGATTAGCTACAATAGTCAATGGTGTTCTGAGAAAAACAACTCATGACATGGAACTAAATGGGTATTTGATTCCTAAGGGTTGGAGAATATATGTATATACAAGAGAGATAAATTATGACCAGTTTCTGTATCAAGATCCACTCGCATTTAATCCATGGAGATGGCTGGGAAACGGCTTAGAGTCACAGAGCCACTTCTTGATATTTGGAGGAGGCACTAGGCAGTGTCCAGGGAAAGAGTTGGGAATTGCAGAAATTTCCACTTTCTTGCATTATTTTGTAACTAGATACAGGTGGGAAGAAGTAGGGGGAGATAAACTAATGAAATTTCCTAGAGTTGAGGCACCAAATGGACTTCACATTAGGGTCTCATCTTTTACTAACTAG 1407 0.4058 MAMLLGIIGGVVLVLCFCSVFLLKWNEVRYRRKGLPPGTMGWPLFGETTEFLKQGPNFMKNQRTRYGSFFKSHILGCPTIVSMDPELNRFILMNEAKGLVPGYPQSMLDILGKCNIAAVHGSTHKYMRGALLSIISPTLIRDQHLPKIDHFMRSFLTHWDTKIINLQDKTKEMAFLSSLKQIAGMESSSISHPFMTEFFKLVLGTLSLPIDLPGTNYRRGLQARKNIISILSELLDERKASQETHQDMLGSLMMGRRENRYKLTDEEIIDLIITIMYSGYETVSTTSMMAVKYLHDHPKVLEEMRNEHFAIRERKKPEDPIDCNDLKSMRFTRAVIFETSRLATIVNGVLRKTTHDMELNGYLIPKGWRIYVYTREINYDQFLYQDPLAFNPWRWLGNGLESQSHFLIFGGGTRQCPGKELGIAEISTFLHYFVTRYRWEEVGGDKLMKFPRVEAPNGLHIRVSSFTN 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60600g00002 468 Pfam Cytochrome P450 36 450 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60600g00002 468 PRINTS E-class P450 group I signature 333 351 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60600g00002 468 PRINTS E-class P450 group I signature 406 416 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60600g00002 468 PRINTS E-class P450 group I signature 416 439 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60600g00002 468 PRINTS E-class P450 group I signature 373 397 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60600g00002 468 PRINTS E-class P450 group I signature 63 82 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60600g00002 468 PRINTS E-class P450 group I signature 267 284 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60600g00002 468 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 409 418 IPR017972 GO:0005506|GO:0016705
Stsc60600g00002 468 Gene3D Cytochrome P450 26 465 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60600g00002 468 CDD CYP90-like 62 464 - -
Stsc60600g00002 468 SUPERFAMILY Cytochrome P450 29 451 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60600g00002 468 PRINTS P450 superfamily signature 334 345 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60600g00002 468 PRINTS P450 superfamily signature 278 295 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60600g00002 468 PRINTS P450 superfamily signature 407 416 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60600g00002 468 PRINTS P450 superfamily signature 416 427 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60600g00002 468 FunFam Cytochrome P450 85A1 26 465 - -
Stsc60600g00002 468 PANTHER CYTOCHROME P450 26 33 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60600g00002 Stsc-Chr60600 14834 18042 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60600g00002 83 466 Cytochrome P450 AT5G38970 69.870 0.0 567
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60600g00002 K09590 - gmx:100785414 822.387