Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc605g00008 ATGACAATTGATGTTAACAGAGATGAAATGCCCCCGATAAAAGTAATGCAGACAGCTGTAATTGGTACAAATGGGTCCTTAACTTACCGGCTAAACTTGGATGGTTTTCCTGGAATGGGTTGGGCATTCACATATTTCGCAGAGATCGAAGATTTGCAAAAAGATGAATCAAGAAAATTCAGGCTAGTACTTCCGGGTCACAATGATATGAGCAAGGCTGTGGTAAATATTGAGGAAAATGCTCAAGGGAAATATCGCCTTTACGAACCAGGATATACCAATTTATCCCTACCGTTTGTGCTGTCCTTTAAATTTAGCAAGACCTCTGATTCTACCAGGGGTCCTCTTCTAAATGCCATGGAGATAAATAAGTATCTAGAGAAAAATGATGGCTCTCCTGACGGTGATACTATATCAGCTGTAGTTTCACACTACTCTTCAGCTGACTGGGCACAAGAAGGGGGTGATCCTTGCCTACCCGCTCCGTGGTCATGGGTCCGCTGTAGCTCAGATCCACAGCCAAGAATTGTTTCAATTTTATTGTCAGGTAAAAACTTGACAGGCAATATTCCATTGGACATTACAAAATTGACTGGTCTTGTTGAAATATGGCTTGATGGAAATATGTTGACTGGTACAATACCCGATTTTACTGGATGCATGGACTTAAAGATCATTCATCTTGAGAACAACCACTTAACAGGTCAATTACCTTCCTCCTTGGCGAACCTTCCAAATTTGAGGGAAGTGTATGTACAAAATAATATGTTATCCGGAACAGTACCTTCAGATCTTCTGAGTGAAGATTTGGTCATAAACTACTCTGGAAACATTAATCTTCATAAGAAAAATGGAAAACAAAGCCATATGATTGTTATCATGGGTTCATCTGCTGGTGCTGCAGTTCTTCTTCTGGCAACTATAGTCTCTTGCTTGTTTTTGCGTAAAGGAAAGAAAAAACATCATGAGCAAGACAAACTTGTCTCTCGCCCGTCTCAAACTATCAGTTCTTCCGTGAGTGAAGTTCCTTCAAATGCAGAAGCTGCTCACTGCTTCAGTTTTTCTGAAATTGAAAGTTCAACCAATAACTTTGAGAGAAAAATTGGCTCCGGAGGTTTTGGAGTTGTTTATNNNNNNNNNNTAGCAGTTAAAGTTCTAACCAGTAATTCCTACCAAGGCAAACGAGAGTTCTCCAACGAGGTGACTCTTCTATCAAGAATTCATCACAGAAACTTGGTACAGCTTCTCGGTTATTGCCGTGAAGAAGGGAATAGCATGCTTATTTATGAGTACATGCATAACGGGACTCTCAAAGAACATCTTTACGGCCCATTAACACATGGACGAAGCATCAATTGGATTAAGCGCCTCGAGATTGCAGAAGATGCTGCAAAAGGAATAGAATATCTTCATACAGGATGTGTTCCTGCAGTCATACATAGAGACTTAAAAACCAGCAATATTCTTCTTGACAAGCAAATGCGAGCCAAGGTTTCAGATTTTGGCCTTTCAAAACTTGCTGTTGATGGAGCCTCCCATGTCTCTAGCATTGTTCGGGGGACAGTAGGATATCTTGACCCTGAGTACTATATTTCTCAGCAGTTGACAGACAAAAGTGATATTTATAGTTTTGGAGTTATTCTTCTTGAACTCATATCTGGTCAAGAAGCGATATCAAATGACAGCTTTGGCGCTAATTGCCGAAACATAGTCCAGTGGGCAAAATTTCACATTGAGAGTGGAGACATACAAGGTATCATTGATCCCGTGCTAAGGAACAACTATGATCTACAATCAATGTGGAAAATAGCGGAGAAAGCATTGATGTGTGTTCAACCTCACGGACATATGCGGCCGCCGATATCAGAAGTTCTCAAGGAGATACAAGATGCGACCGCCATCGAGAGAGAGGTCGGAGGCAATTCAGACGAGTTATCAAGAAATTCTCTTCATTCTTCCATCAACATTATTGGTTCCATCGATCTGGTTGGAACTGACAACTTCGTGTCTATTGATGAATCCATGGCACAGCCTACTGCAAGATAG 2046 0.4081 MTIDVNRDEMPPIKVMQTAVIGTNGSLTYRLNLDGFPGMGWAFTYFAEIEDLQKDESRKFRLVLPGHNDMSKAVVNIEENAQGKYRLYEPGYTNLSLPFVLSFKFSKTSDSTRGPLLNAMEINKYLEKNDGSPDGDTISAVVSHYSSADWAQEGGDPCLPAPWSWVRCSSDPQPRIVSILLSGKNLTGNIPLDITKLTGLVEIWLDGNMLTGTIPDFTGCMDLKIIHLENNHLTGQLPSSLANLPNLREVYVQNNMLSGTVPSDLLSEDLVINYSGNINLHKKNGKQSHMIVIMGSSAGAAVLLLATIVSCLFLRKGKKKHHEQDKLVSRPSQTISSSVSEVPSNAEAAHCFSFSEIESSTNNFERKIGSGGFGVVYXXXXAVKVLTSNSYQGKREFSNEVTLLSRIHHRNLVQLLGYCREEGNSMLIYEYMHNGTLKEHLYGPLTHGRSINWIKRLEIAEDAAKGIEYLHTGCVPAVIHRDLKTSNILLDKQMRAKVSDFGLSKLAVDGASHVSSIVRGTVGYLDPEYYISQQLTDKSDIYSFGVILLELISGQEAISNDSFGANCRNIVQWAKFHIESGDIQGIIDPVLRNNYDLQSMWKIAEKALMCVQPHGHMRPPISEVLKEIQDATAIEREVGGNSDELSRNSLHSSINIIGSIDLVGTDNFVSIDESMAQPTAR 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc605g00008 681 Pfam Malectin-like domain 6 123 IPR024788 -
Stsc605g00008 681 PANTHER OS07G0107800 PROTEIN-RELATED 223 631 - -
Stsc605g00008 681 SUPERFAMILY Protein kinase-like (PK-like) 349 626 IPR011009 -
Stsc605g00008 681 SMART serkin_6 362 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc605g00008 681 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 432 640 - -
Stsc605g00008 681 ProSiteProfiles Protein kinase domain profile. 362 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc605g00008 681 Gene3D Phosphorylase Kinase; domain 1 336 431 - -
Stsc605g00008 681 FunFam Leucine-rich repeat protein kinase family protein 136 286 - -
Stsc605g00008 681 SUPERFAMILY L domain-like 162 265 - -
Stsc605g00008 681 Pfam Protein tyrosine and serine/threonine kinase 364 558 IPR001245 GO:0004672|GO:0006468
Stsc605g00008 681 ProSitePatterns Serine/Threonine protein kinases active-site signature. 478 490 IPR008271 GO:0004672|GO:0006468
Stsc605g00008 681 Gene3D Ribonuclease Inhibitor 138 289 IPR032675 -
Stsc605g00008 681 Gene3D Transferase(Phosphotransferase) domain 1 432 648 - -
Stsc605g00008 681 CDD STKc_IRAK 368 629 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc605g00008 Stsc-Chr605 21111 26565 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc605g00008 1 466 Receptor kinase-like Gene Family AT2G37050 64.151 0.0 646
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Stsc605g00008 PK_Tyr_Ser-Thr 5.1e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc605g00008 - - gmx:100798007 1143.26