Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60599g00008 ATGGCAGGTTTATTCTCTCTAGGTCCACACCATAGCAAACAAGAACAACAAGATCAAGAAGAACACAATCACAATCACAACAACATCCAATTACTCTTCCGAAACGAAGAGATCTACACCAACACCAACACCAACACCAACACCGCGAACAGAGGCTTCGAGATATGGCCTCATCAACCAAGCTACTACTCCTTCGGTTTGGGTCCAGCTTCTAATAACAGAAACCACAACAACAACACCACAAACCTAAACGACGACGTTTCAGTTTCTTTCTCTGATGACTCTGCTAACCGCTTCGGCTTCACTGTGATGAGATCTTCTTCTTCTGGATCCGCTTTGGGAACCGGCACCAATTGCCAAGACTGCGGTAACCAAGCCAAGAAAGATTGCCCTCACCTTCGCTGCAGAACCTGCTGCCGAAGCCGAGGGTTTCAGTGCTCCACTCACGTGAAGAGCACGTGGGTTCCTGCTGCCAAACGACGCGAGCGCCAGCAGACCCTCGCGTCGTTGCAGCAGCAGCAACACCACCACAACCGCCAAGATCATGAACTCGGAGGAGAAGGAGGAGGAGGAAATGTTCTTTCTAGAAGAACTAGAGAAGCCGCCGCGGCCGCCACTACCTCCGCTTGCGTTCCCGTACCGATTACCACTACAGG 656 0.5122 MAGLFSLGPHHSKQEQQDQEEHNHNHNNIQLLFRNEEIYTNTNTNTNTANRGFEIWPHQPSYYSFGLGPASNNRNHNNNTTNLNDDVSVSFSDDSANRFGFTVMRSSSSGSALGTGTNCQDCGNQAKKDCPHLRCRTCCRSRGFQCSTHVKSTWVPAAKRRERQQTLASLQQQQHHHNRQDHELGGEGGGGNVLSRRTREAAAAATTSACVPVPITTTG 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60599g00008 219 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 202 IPR007818 GO:0003700|GO:0006355
Stsc60599g00008 219 MobiDBLite consensus disorder prediction 1 23 - -
Stsc60599g00008 219 MobiDBLite consensus disorder prediction 157 193 - -
Stsc60599g00008 219 Pfam Domain of unknown function (DUF702) 116 208 - -
Stsc60599g00008 219 NCBIfam putative zinc finger domain, LRP1 type 118 160 IPR006510 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60599g00008 Stsc-Chr60599 78226 79002 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60599g00008 1 174 C2H2 Transcription Factor Family AT1G19790 45.263 1.35e-43 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Stsc60599g00008 DUF702 4.8e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60599g00008 - - gmx:100794846 190.66