Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60599g00005 ATGATAGGAATTGAGGAGAGAAAGCAAGTGAGGAAGCAAGCACATGGCAATTCAAGAAAGGGTTGTATGAGGGGAAAAGGAGGCCCTGAAAATGCAACATGCACCTACAAAGGTGTAAGGCAAAGGACTTGGGGAAAATGGGTAGCCGAGATCCGTGAGCCACATCGTGGTTCACGTATCTGGCTTGGAACGTTTCAAACGTCTCATGAAGCTGCCTTGGCATATGACACAGCTGCTCGTAAGCTTTATGGCCATGATGCTAAGCTCAACCTCCCTCACCTTCATCCCTCTAAATCCACCACAAATCAGCAACAACAACAAACTCAGATGATGATTAATGAGCACAACATTGGTACCTCTTTCAATAACAACAAACTTTTGGTGCCCATGGCTGAGGTTGGTGTTACACCAATTTACACAAGTGAAGCTACTATGTCTATTCCCTCATATGATCATATCAACACCAACAACAACATTAATTCCAAACCTATTATATTGGAAAGCTTCCAAAACCCTACAAAGCCTATGAAGAGTTCCTCATCATTCTGTGAGGCAATGAATGAAGATTTGCCAGGTTTTTATGATGATAATTCCATTTGGACAGAAGCTGCTGCATCGTTGAATTTTCCTACATTTTCAGATGCTAGTAACAATGCGTTTTATGAAGCTGGGTACATGGCTTGGGATATGCAAAGTTCATGGTGA 705 0.4227 MIGIEERKQVRKQAHGNSRKGCMRGKGGPENATCTYKGVRQRTWGKWVAEIREPHRGSRIWLGTFQTSHEAALAYDTAARKLYGHDAKLNLPHLHPSKSTTNQQQQQTQMMINEHNIGTSFNNNKLLVPMAEVGVTPIYTSEATMSIPSYDHINTNNNINSKPIILESFQNPTKPMKSSSSFCEAMNEDLPGFYDDNSIWTEAAASLNFPTFSDASNNAFYEAGYMAWDMQSSW 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60599g00005 234 FunFam Ethylene-responsive transcription factor 2 34 93 - -
Stsc60599g00005 234 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 9 172 - -
Stsc60599g00005 234 PRINTS Ethylene responsive element binding protein signature 58 74 IPR001471 GO:0003700|GO:0006355
Stsc60599g00005 234 PRINTS Ethylene responsive element binding protein signature 36 47 IPR001471 GO:0003700|GO:0006355
Stsc60599g00005 234 CDD AP2 34 94 IPR001471 GO:0003700|GO:0006355
Stsc60599g00005 234 Gene3D AP2/ERF domain 35 93 IPR036955 GO:0003700|GO:0006355
Stsc60599g00005 234 MobiDBLite consensus disorder prediction 1 28 - -
Stsc60599g00005 234 Pfam AP2 domain 35 85 IPR001471 GO:0003700|GO:0006355
Stsc60599g00005 234 ProSiteProfiles AP2/ERF domain profile. 35 92 IPR001471 GO:0003700|GO:0006355
Stsc60599g00005 234 SMART rav1_2 35 98 IPR001471 GO:0003700|GO:0006355
Stsc60599g00005 234 SUPERFAMILY DNA-binding domain 35 93 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60599g00005 Stsc-Chr60599 38781 40477 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60599g00005 1 229 AP2-EREBP Transcription Factor Family AT1G75490 42.128 6.27e-48 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc60599g00005 AP2 8.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60599g00005 - - adu:107493032 317.39