Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60599g00002 ATGTATCAGAACCAAGCCTTTCCTTCAGGATCCTATGAAGAAATGTTATCTGGGAATTCCCTATTAACTCATCATAACTATGGCGATTCAGTCGGAGGAGGAGGAGGAGGACACAACAATGAGCTAAAGTTCATCTCCTCTCTAGGTGAAGCAGTGACTATGGGAGAGCATTCCAATGCTGCTGCGACCGGCGATCCGTCTTGCAACTCTTTTGCTGGTGATCAAAACATGCAGTGTCAAGGCTTGTCGCTTAGCCTCGGATCGGTTATGCCTTCTATTGCAACATCAATGCCTCATCACTTTCAATACCCTCAGTATCACAACTCTAGCTTCACTTCACTGATGAATGCCATGCCGAGCTTAAAGGCAAATAATGGATCATCCCTTAAAGATGATGAGGTGAGAAACACTGAATGCATTACACCACCAATGTCTTCTGGAGGATTCTACAACTCTATTAAGAGGGAAGGTTTGTATAACAATGCTAATCACCCTTCAATGTGCCTCGGGGAAGGCCAGGTCGATCCGGGCCTACATGGATCGGCTGGTTTTTCCTCCAGTACTGCCTTAAACTCACAATACCTTAAGGCAGCACAGGAGTTGCTTGATGAAATAGTTAATGTCCGAAAGGCTTTGAAGCAGCCTGGATTGGAAAAACAACAGAGCTTTCGTGACACCGGAATAGATGGCTCAAAAGATTCTGATGGAAAATCTAACAGTCAATCTGTGCAAGTATCTTCAGGTGCCAATGGTTCTGCTGTAAACTCTTCAACCGAGCTGTCGCCGGCAGACCGACAGAATTTGTTGGACAAGAAGACAAAACTTTTGGCTATGTTAGATGAGGTAGATAAAAGATACAGACAATATTGCCATCAGATGCAGATTGTGGTATCATCATTTGATATGGTTGCCGGGTGTGGAGCTGCCGAACCGTACACTGCACTTGCATTGCGCACGATTTCGCGTCACTTTCGGTGTTTGCGCGACGCCATCAGTGGCCAGATTCAAGTGACTCAGAGGAGCCTTGGAGAGCAAGAAGGGATACCTCGGCTGCGCTATGTCGATCAGCAACTAAGACAACAAAAGGCACTTCAGCAACTTGGTGTGATGAGACAAGCTTGGAGACCTCAGAGAGGACTTCCTGAGAGCTCTGTATCGATACTCCGTGCATGGCTATTCGAGCATTTCCTTCATCCTTATCCAAAGGATTCAGAGAAGATTATGCTGGCAAGGCAAACCGGCTTGACCCGAAACCAGGTGGCAAATTGGTTCATAAATGCAAGGGTGCGGCTATGGAAACCGATGGTTGAAGAAATGTATAAAGAAGAATTTGGTGATTCTGAGATGAGTTGCAACCTCTTATCCGAAAACAGCATACCAAAAGCTTCAAGAGATGATGTTCAAGTTTCTGATAATAATAACAAAGGAGAAGAGTCACAAGAAAATTTGGTAGCTGTTGATGATAGTGTTCAACATGGTATCCAAAGTAGTGATTATGGTGAAAACCTCATGGATTCTTCTTCTTCAAGGACTAGTAGGAAATTGCAACAATGTGATCAAAGATTTAACATGAGAAACACATCTTTTTCAAATGCTTCTACAATACAAATCAATGGTCATGATGATGGTAATGGTTGCTTAACGGCTTCAACTCATGCAACATATGATTATTCTGCGTTGGGAAACTTTGCGGCTGTCGGCGGCCCAGTATCACTTGCGCTCGAGTTGAGGAACCGCGAGAGCAACGGATTAGGCATGTCAAATGGTGATGAGATACACAACAAAAGGAGCAGTAACCAGACTTTGGCTTCCTCATCTGAGAATGATTTGTTGGATTATCATTTGACAGAACAAGAAAAGCAGCAGCAGCAACAGCAACAACACAAGTTTGGGAATCCACAACAACGGTTGTTACATGAGTTTGTTGTTTGA 1932 0.4405 MYQNQAFPSGSYEEMLSGNSLLTHHNYGDSVGGGGGGHNNELKFISSLGEAVTMGEHSNAAATGDPSCNSFAGDQNMQCQGLSLSLGSVMPSIATSMPHHFQYPQYHNSSFTSLMNAMPSLKANNGSSLKDDEVRNTECITPPMSSGGFYNSIKREGLYNNANHPSMCLGEGQVDPGLHGSAGFSSSTALNSQYLKAAQELLDEIVNVRKALKQPGLEKQQSFRDTGIDGSKDSDGKSNSQSVQVSSGANGSAVNSSTELSPADRQNLLDKKTKLLAMLDEVDKRYRQYCHQMQIVVSSFDMVAGCGAAEPYTALALRTISRHFRCLRDAISGQIQVTQRSLGEQEGIPRLRYVDQQLRQQKALQQLGVMRQAWRPQRGLPESSVSILRAWLFEHFLHPYPKDSEKIMLARQTGLTRNQVANWFINARVRLWKPMVEEMYKEEFGDSEMSCNLLSENSIPKASRDDVQVSDNNNKGEESQENLVAVDDSVQHGIQSSDYGENLMDSSSSRTSRKLQQCDQRFNMRNTSFSNASTIQINGHDDGNGCLTASTHATYDYSALGNFAAVGGPVSLALELRNRESNGLGMSNGDEIHNKRSSNQTLASSSENDLLDYHLTEQEKQQQQQQQHKFGNPQQRLLHEFVV 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60599g00002 643 CDD homeodomain 374 435 IPR001356 GO:0003677
Stsc60599g00002 643 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 122 470 - -
Stsc60599g00002 643 MobiDBLite consensus disorder prediction 584 605 - -
Stsc60599g00002 643 MobiDBLite consensus disorder prediction 461 481 - -
Stsc60599g00002 643 MobiDBLite consensus disorder prediction 233 264 - -
Stsc60599g00002 643 Pfam Associated with HOX 190 332 IPR006563 -
Stsc60599g00002 643 MobiDBLite consensus disorder prediction 495 516 - -
Stsc60599g00002 643 SUPERFAMILY Homeodomain-like 375 441 IPR009057 -
Stsc60599g00002 643 ProSiteProfiles 'Homeobox' domain profile. 371 434 IPR001356 GO:0003677
Stsc60599g00002 643 SMART prehox3 182 333 IPR006563 -
Stsc60599g00002 643 SMART HOX_1 374 438 IPR001356 GO:0003677
Stsc60599g00002 643 Gene3D - 371 448 - -
Stsc60599g00002 643 MobiDBLite consensus disorder prediction 216 265 - -
Stsc60599g00002 643 Pfam Homeobox KN domain 391 430 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60599g00002 Stsc-Chr60599 9187 13321 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60599g00002 182 476 Homeobox Transcription Factor Family AT2G16400 60.065 2.40e-113 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Stsc60599g00002 POX 3.7e-51 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60599g00002 - - gmx:100775682 744.191