Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60596g00008 ATGCCCAACCACAACAACAACCCATACGATCAACCTGATGATATCATCTATTCATCCTCTTCTTCTTCTTCATCCTCCGTGGACTGCACTCTCTCCCTCGGAACCCCATCCACCCGTTTCACCCAAGACGAACAGAACCGTACCCGCCACGAACGCCGTTCCTCCGTCTCCAACTTCTGCTGGGATTTGCTACATTCCACCAAACACAACAACCACTCTCAAACCAAGTCCTCCTCAAACCGTACCTCCAACAACACAGACCCTCTCGTCGCGCGTCGTTGCGCCAACTGTGACACCACTTCTACACCACTCTGGAGGAATGGCCCCCGTGGCCCAAAGTCTCTATGCAATGCCTGTGGCATACGGTACAAGAAAGAGGAAAGGAGGGCCAGTGCGGCGGCCGCCACCACCGCCGCCGCCTCTGGTGGCGTCATGGAGTCACCGCAGATGTACAGCCACCACAACAGTAACTCATCGTGGTACCCGCATTCGCAGAGCCAGAAGATGGGGATGGGCGGCGAGTTCCGTTTCGTGGACGACGGTGACGTCCGAGAGTCCGAAAACGGCATTCCGTTCCTGTCATGGAGGCTCAACGTTACTGACAGAACAAGCATGGTTCATGACTTCACAAGATGA 636 0.5535 MPNHNNNPYDQPDDIIYSSSSSSSSSVDCTLSLGTPSTRFTQDEQNRTRHERRSSVSNFCWDLLHSTKHNNHSQTKSSSNRTSNNTDPLVARRCANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEERRASAAAATTAAASGGVMESPQMYSHHNSNSSWYPHSQSQKMGMGGEFRFVDDGDVRESENGIPFLSWRLNVTDRTSMVHDFTR 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60596g00008 211 ProSiteProfiles GATA-type zinc finger domain profile. 88 124 IPR000679 GO:0006355|GO:0043565
Stsc60596g00008 211 SMART GATA_3 88 143 IPR000679 GO:0006355|GO:0043565
Stsc60596g00008 211 MobiDBLite consensus disorder prediction 1 42 - -
Stsc60596g00008 211 Pfam GATA zinc finger 94 128 IPR000679 GO:0006355|GO:0043565
Stsc60596g00008 211 MobiDBLite consensus disorder prediction 1 52 - -
Stsc60596g00008 211 Gene3D - 90 168 IPR013088 GO:0006355|GO:0008270
Stsc60596g00008 211 ProSitePatterns GATA-type zinc finger domain. 94 119 IPR000679 GO:0006355|GO:0043565
Stsc60596g00008 211 MobiDBLite consensus disorder prediction 69 88 - -
Stsc60596g00008 211 PANTHER GATA TRANSCRIPTION FACTOR 18 3 211 IPR044272 GO:0003700|GO:0009908
Stsc60596g00008 211 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 91 130 - -
Stsc60596g00008 211 CDD ZnF_GATA 93 125 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60596g00008 Stsc-Chr60596 40157 41060 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60596g00008 23 211 C2C2-Gata Transcription Factor Family AT3G50870 45.798 2.63e-55 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Stsc60596g00008 GATA 5.5e-18 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60596g00008 - - gmx:100790571 280.026