Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60596g00004 ATGAGCATGGAAAGAAGAAGAGGGGAAGAAGAAGAAGAGGATAGGGAATTAGAGATGGTAACAGCAACAACCACTTACAACAACAACAATAATAGGGATGATGATTCTTCAACTTCTTCAAAGTTGTCTTCTCCAACTGTGGTGGTTAGAGCTTCTGAAACAACTCAACAACCATCACTACTCTTCCACCACCATCATCCTCCACTTCAACATCTCTATCCTCATCTAAGACCAACCACAGATCCAGATCTAACATCCTCTCCTATTGCCACAACAGCACCACAGCCTCCTCCTCCGCCGCCACAGGCAGGTGCCACAACCACCACATCATTGATAAGGTACAGAGAATGTCTGAGAAACCACGCAGCAAGCATGGGAAGCCATGTGGTAGATGGTTGTGGAGAGTTCATGCCAAGCGGAGAAGAAGGCACACCGGAATCACTGCGGTGCGCCGCCTGTGAGTGCCACCGTAACTTCCACCGCAGAGAGGTTGAAGGCTCCCCTCCTCAACAGCATCACAAGCACAACGGTCACAGCACCACTCATCTTGTTCAGTTCCACACACCACCACCACCACCACCACCTCCATCATCCCTTCATCATCAAAGATTCTCTCATGCTCCAGCGTCTGCTCAGCCGGTGATGATGGCGTTCGGAGGAGGAGGAGCTGCTGAATCCTCAAGCGAAGATCTGAACATGTTTCATCATTCAAACGCATTAGGAGGGCAATTCTCAGTGCAGCAAGCATCAGGTTCAAGGAAGAGGTTCAGAACAAAGTTCACACAGAATCAGAAAGATAGAATGATGGAGTTTGCTGAGAAGATTGGATGGAAGATTCAGAAGCACGATGAACAAGAAGTGCAGCAGTTTTGTTCTCAAGTTGGTGTGAAGAGGCAAGTCTTCAAGGTTTGGATGCACAACAACAAGCAAGCTTCCAAGAAACAACAACAACAGCAGCAGTAA 963 0.4798 MSMERRRGEEEEEDRELEMVTATTTYNNNNNRDDDSSTSSKLSSPTVVVRASETTQQPSLLFHHHHPPLQHLYPHLRPTTDPDLTSSPIATTAPQPPPPPPQAGATTTTSLIRYRECLRNHAASMGSHVVDGCGEFMPSGEEGTPESLRCAACECHRNFHRREVEGSPPQQHHKHNGHSTTHLVQFHTPPPPPPPPSSLHHQRFSHAPASAQPVMMAFGGGGAAESSSEDLNMFHHSNALGGQFSVQQASGSRKRFRTKFTQNQKDRMMEFAEKIGWKIQKHDEQEVQQFCSQVGVKRQVFKVWMHNNKQASKKQQQQQQ 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60596g00004 320 MobiDBLite consensus disorder prediction 20 53 - -
Stsc60596g00004 320 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 113 164 IPR006456 -
Stsc60596g00004 320 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 96 310 - -
Stsc60596g00004 320 SUPERFAMILY Homeodomain-like 247 314 IPR009057 -
Stsc60596g00004 320 FunFam Zinc-finger homeodomain protein 2 242 314 - -
Stsc60596g00004 320 ProSiteProfiles 'Homeobox' domain profile. 251 315 IPR001356 GO:0003677
Stsc60596g00004 320 MobiDBLite consensus disorder prediction 65 106 - -
Stsc60596g00004 320 Pfam ZF-HD protein dimerisation region 112 164 IPR006456 -
Stsc60596g00004 320 MobiDBLite consensus disorder prediction 164 204 - -
Stsc60596g00004 320 MobiDBLite consensus disorder prediction 1 53 - -
Stsc60596g00004 320 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 114 163 IPR006456 -
Stsc60596g00004 320 NCBIfam homeobox domain, ZF-HD class 253 310 IPR006455 -
Stsc60596g00004 320 Gene3D - 242 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60596g00004 Stsc-Chr60596 21056 22018 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60596g00004 54 315 ZF-HD Transcription Factor Family AT2G18350 47.122 3.96e-72 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Stsc60596g00004 ZF-HD_dimer 4.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60596g00004 - - gmx:100776691 293.123