Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60595g00015 ATGGGTCGTGGAAGAATACCAATGGAGCTCATCCAGAAGGAAAAAGATAGGAAGACAACATTCCTAAAGAGAAAGAATGGATTAATGAAGAAAGTGTATGAGTTCTCCACTCTTTGCAACGTTGATGTTTGTGTAATTATCTATGGCCCCAATTTTGAAGGTCAAAGATCCACCGAACCTGAGACATGGCCCCAAGATTCTAAAGAGGTACGTAGAATCATTCAAAAGTATCGTAACACAACAAGTGATAGACGTGCTAGGATCTATGATGTTCAAGAGTATTACAAAGATAGGGTTAAGAAAGTTGAAGGTGAGATTTCTAAGGTGCACAAAGAGAAGCTTAAGATCATGTACCCTACTTGGGATGACTCATTCGATGATCTTAGTGAGGACCAATTGAGGGTTTTTCTTAGTATTTTGGATTCTAAGATTGTTGCTTGCAATCAAAGAATCAACATGCTAAAGCAAAAGGGAAAAACATTGGTAGAATCATCAGCAAAAGACATTAATGTTAATAATGGTGATCTTGTTGTCGCTACTACTACTCCTCCTTACTTGTCTTTATCAAACCCTAGTAGCCACCTTAATTTCATGCCAAACATGTCTCAAGCACAATTTTTTCCTCACCTTAATAATCCCATGACACCCTTTATTGGTGATACCAACCAATTACCATTTTACCCTTTGCAACTAGGGCAAAGTTCATCACAATCTTCCCCTCTTCATTTTGACCAAAATGGAATGCAATTTATGGGGGAAAATAATGGTATGATGAATTGGGAGCAACAAGTTGGTAGCTTTAGCAATCATGATATAAAGTTTGATTTGCTAAAAGAGAATGGAGATGGAAGCAATCATAACTCTTCATCATCAAGCTATTACAAAGGGAATATATCATCATCATCATCATCAATGCAGCTATATAATAGTTTTATTGCTCTACCACAATATCATGATGTGCCTCCTGAGTATCAAGTTAATGGAATGTGTGATGCAAATATGTTTCATCAAGTTCAAATGTTCAACTACATGCATGAAAGGAAGTAG 1047 0.3668 MGRGRIPMELIQKEKDRKTTFLKRKNGLMKKVYEFSTLCNVDVCVIIYGPNFEGQRSTEPETWPQDSKEVRRIIQKYRNTTSDRRARIYDVQEYYKDRVKKVEGEISKVHKEKLKIMYPTWDDSFDDLSEDQLRVFLSILDSKIVACNQRINMLKQKGKTLVESSAKDINVNNGDLVVATTTPPYLSLSNPSSHLNFMPNMSQAQFFPHLNNPMTPFIGDTNQLPFYPLQLGQSSSQSSPLHFDQNGMQFMGENNGMMNWEQQVGSFSNHDIKFDLLKENGDGSNHNSSSSSYYKGNISSSSSSMQLYNSFIALPQYHDVPPEYQVNGMCDANMFHQVQMFNYMHERK 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60595g00015 348 CDD MADS_SRF_like 2 78 IPR033897 GO:0000981|GO:0000987|GO:0045944
Stsc60595g00015 348 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 51 IPR002100 GO:0003677|GO:0046983
Stsc60595g00015 348 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 193 - -
Stsc60595g00015 348 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Stsc60595g00015 348 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Stsc60595g00015 348 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Stsc60595g00015 348 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Stsc60595g00015 348 Gene3D - 13 101 IPR036879 GO:0003677|GO:0046983
Stsc60595g00015 348 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Stsc60595g00015 348 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60595g00015 Stsc-Chr60595 73621 74667 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60595g00015 1 150 Type I MADS-box Gene Family AT5G55690 42.384 1.12e-31 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Stsc60595g00015 SRF-TF 2.9e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60595g00015 - - aip:107620908 406.371