Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60594g00008 ATGTCCGGCGGCGCTGGACCACCGCCACCGCATACCAAGCGGGACGATTCCGGCGCCCCTGCCCGGCCGCCGCTCAAGCGCAACCTCGCATTTGCGTCCATGAAGCCGCCGTTCGCTCAGCCGGATGAGTACCATAGCTTCTCTTCCTCCTCCTCCGCTGCTCCTGAGTCCGGCAGGAGGGTCGCCGCCGATCAACAGGCTGAAGTCGTTGTTGTTAGATCTCCGCATGTTAAGAGGAAGGGTGGAATGGCTAACATCGAAGGAGACTCGCAAAAGATTAGTAATGTTTCTGGATCAGCAAACGCAGCAAGTAGTCCTTTCAAAACTCCGGTGTCGTCGAAAGGGGGAAGGACGCATTCTAAGTCGAAGGCTTCCAAAGAAGGAACTCAATGTCCACAGACACCCATCTCCAATTCAGGTTCCCCGTCTCCTCTTACTCCTGCTGGAAGCTGTCGATATGACAGTTCCTTAGGTATGTTGACAAAGAAGTTTGTCAATTTGGTAAAGCATTCCGAAGATGGTAATCTTGACCTAAATCAAGCAGCAGAAACTCTAGAGGTGCAAAAAAGGAGGATATATGACATAACTAATGTTTTGGAAGGCATTGGTCTCATCGAAAAGAAGCTCAAGAACAGAATACATTGGAAGGGAACGGAATCTTCTATATCTGGTGACATTGATGGTGATATCTCAATGCTTAAGGAAGAAGTTGAGAAACTCTCCTTGGAAGAGCACAGATTAGATGACCGAATAAGAGAAATGCAAGAAAAGCTTAGGAGTTTGAGTGAAGATGAAAACAAGCAGAAGTTACTTTTTGTGACTGAAGAAGATATTAAGGCCGTTCCTTGCTTCCAGAATGAAACCCTGATAGCAATTAAAGCTCCACATGGAACCACACTAGAAGTCCCTGATCCGGAGGAAGCTGTTGACTATCTGCAGAGGAGATATAGGATCATTCTTAGAAGCACTATGGGTCCCATTGACGTTTACCTTATCAGTCAGTTCGAAGAGAAATTTGAAGAGATAAATGGTGCTGAGCCCCCTGTAAACTTCCCCCTTCCTTCAAGTTCAGGGTCCAATGAGCAACCAGTGGCAGAAGCAGTTCCTGCTGAGTGCAGTGCAGAAGGACTAGAACCTCAACCTCAGATCCCCTCTCAAACATACTGTGATCTAAACACATCACAAGACTTTGGTGGGGGCATGATGAAGATTGTCCCTTCAGATGCTGATAATGATGCAGATTATTGGCTTCTATCAGATGCTGACATTAGCATAACAGATATGTGGAGAACAGATTCTAGTGTTGATTGGAATGGGGTGGATATGCTTCATCCTGACTTCGAAAATATCCCTAGGCCTCAAACTCCGTCATCCGGGATCCCTGAAACTCCATCCACTGTAACTAATTCTAATCAGAGCCTTGGGAATGTTCGAGGATGCTATCAGGAGCTGTTGAATGTGAAGCTGTGA 1470 0.4673 MSGGAGPPPPHTKRDDSGAPARPPLKRNLAFASMKPPFAQPDEYHSFSSSSSAAPESGRRVAADQQAEVVVVRSPHVKRKGGMANIEGDSQKISNVSGSANAASSPFKTPVSSKGGRTHSKSKASKEGTQCPQTPISNSGSPSPLTPAGSCRYDSSLGMLTKKFVNLVKHSEDGNLDLNQAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIHWKGTESSISGDIDGDISMLKEEVEKLSLEEHRLDDRIREMQEKLRSLSEDENKQKLLFVTEEDIKAVPCFQNETLIAIKAPHGTTLEVPDPEEAVDYLQRRYRIILRSTMGPIDVYLISQFEEKFEEINGAEPPVNFPLPSSSGSNEQPVAEAVPAECSAEGLEPQPQIPSQTYCDLNTSQDFGGGMMKIVPSDADNDADYWLLSDADISITDMWRTDSSVDWNGVDMLHPDFENIPRPQTPSSGIPETPSTVTNSNQSLGNVRGCYQELLNVKL 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60594g00008 489 Gene3D - 146 219 IPR036388 -
Stsc60594g00008 489 SUPERFAMILY "Winged helix" DNA-binding domain 152 215 IPR036390 -
Stsc60594g00008 489 CDD E2F_DD 233 334 IPR032198 GO:0046983
Stsc60594g00008 489 PANTHER TRANSCRIPTION FACTOR E2F 93 435 IPR015633 GO:0000978|GO:0006357
Stsc60594g00008 489 Gene3D - 224 334 - -
Stsc60594g00008 489 Pfam E2F/DP family winged-helix DNA-binding domain 154 217 IPR003316 GO:0005667|GO:0006355
Stsc60594g00008 489 MobiDBLite consensus disorder prediction 449 473 - -
Stsc60594g00008 489 FunFam E2F transcription factor 1 146 219 - -
Stsc60594g00008 489 MobiDBLite consensus disorder prediction 354 391 - -
Stsc60594g00008 489 MobiDBLite consensus disorder prediction 88 118 - -
Stsc60594g00008 489 Coils Coil 230 271 - -
Stsc60594g00008 489 MobiDBLite consensus disorder prediction 1 149 - -
Stsc60594g00008 489 SUPERFAMILY E2F-DP heterodimerization region 230 334 IPR037241 -
Stsc60594g00008 489 SMART E2F_TDP_2 152 217 IPR003316 GO:0005667|GO:0006355
Stsc60594g00008 489 MobiDBLite consensus disorder prediction 125 149 - -
Stsc60594g00008 489 MobiDBLite consensus disorder prediction 451 473 - -
Stsc60594g00008 489 Pfam E2F transcription factor CC-MB domain 233 333 IPR032198 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60594g00008 Stsc-Chr60594 66759 70854 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60594g00008 17 438 E2F-DP Transcription Factor Family AT2G36010 58.028 6.53e-159 458
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Stsc60594g00008 E2F_CC-MB 5.2e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60594g00008 K06620 - gmx:100811762 654.055