Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60594g00007 ATGTCCGGCGGCGCTGGACCACCGCCACCGCATACCAAGCGGGACGATTCCGGCGCCCCTGCCCGGCCGCCGCTCAAGCGCAACCTCGCATTTGCGTCCATGAAGCCGCCGTTCGCTCAGCCGGATGAGTACCATAGCTTCTCTTCCTCCTCCTCCGCTGCTCCTGAGTCCGGCAGGAGGGTCGCCGCCGATCAACAGGCTGAAGTCGTTGTTGTTAGATCTCCGCATGTTAAGAGGAAGGGTGGAATGGCTAACATCGAAGGAGACTCGCAAAAGATTAGTAATGTTTCTGGATCAGCAAACGCAGCAAGTAGTCCTTTCAAAACTCCGGTGTCGTCGAAAGGGGGAAGGACGCATTCTAAGTCGAAGGCTTCCAAAGAAGGAACTCAATGTCCACAGACACCCATCTCCAATTCAGGTTCCCCGTCTCCTCTTACTCCTGCTGGAAGCTGTCGATATGACAGTTCCTTAGGTATGTTGACAAAGAAGTTTGTCAATTTGGTAAAGCATTCCGAAGATGGTAATCTTGACCTAAATCAAGCAGCAGAAACTCTAGAGGTGCAAAAAAGGAGGATATATGACATAACTAATGTTTTGGAAGGCATTGGTCTCATCGAAAAGAAGCTCAAGAACAGAATACATTGGAAGGGAACGGAATCTTCTATATCTGGTGACATTGATGGTGATATCTCAATGCTTAAGGAAGAAGTTGAGAAACTCTCCTTGGAAGAGCACAGATTAGATGACCGAATAAGAGAAATGCAAGAAAAGCTTAGGAGTTTGAGTGAAGATGAAAACAAGCAGAAGTTACTTTTTGTGACTGAAGAAGATATTAAGGCCGTTCCTTGCTTCCAGAATGAAACCCTGATAGCAATTAAAGCTCCACATGGAACCACACTAGAAGTCCCTGATCCGGAGGAAGCTGTTGACTATCTGCAGAGGAGATATAGGATCATTCTTAGAAGCACTATGGGTCCCATTGACGTTTACCTTATCAGTCAGTTCGAAGAGAAATTTGAAGAGATAAATGGTGCTGAGCCCCCTGTAAACTTCCCCCTTCCTTCAAGTTCAGGGTCCAATGAGCAACCAGTGGCAGAAGCAGTTCCTGCTGAGTGCAGTGCAGAAGGACTAGAACCTCAACCTCAGATCCCCTCTCAAACATACTGTGATCTAAACACATCACAAGACTTTGGTGGGGGCATGATGAAGATTGTCCCTTCAGATGCTGATAATGATGCAGATTATTGGCTTCTATCAGATGCTGACATTAGCATAACAGATATGTGGAGAACAGATTGTATCCTTCGTGGTGAATGCTTTTTGCGCCTTTCTTTTTTATTCTTATGTCTTTTACTAAGTAATCCTAAACTGAGAAAAACAGCTAGTGTTGATTGGAATGGGGTGGATATGCTTCATCCTGACTTCGAAAATATCCCTAGGCCTCAAACTCCGTCATCCGGGATCCCTGAAACTCCATCCACTGTAACTAATTCTAATCAGAGGTGA 1506 0.4595 MSGGAGPPPPHTKRDDSGAPARPPLKRNLAFASMKPPFAQPDEYHSFSSSSSAAPESGRRVAADQQAEVVVVRSPHVKRKGGMANIEGDSQKISNVSGSANAASSPFKTPVSSKGGRTHSKSKASKEGTQCPQTPISNSGSPSPLTPAGSCRYDSSLGMLTKKFVNLVKHSEDGNLDLNQAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIHWKGTESSISGDIDGDISMLKEEVEKLSLEEHRLDDRIREMQEKLRSLSEDENKQKLLFVTEEDIKAVPCFQNETLIAIKAPHGTTLEVPDPEEAVDYLQRRYRIILRSTMGPIDVYLISQFEEKFEEINGAEPPVNFPLPSSSGSNEQPVAEAVPAECSAEGLEPQPQIPSQTYCDLNTSQDFGGGMMKIVPSDADNDADYWLLSDADISITDMWRTDCILRGECFLRLSFLFLCLLLSNPKLRKTASVDWNGVDMLHPDFENIPRPQTPSSGIPETPSTVTNSNQR 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60594g00007 501 MobiDBLite consensus disorder prediction 354 387 - -
Stsc60594g00007 501 SUPERFAMILY E2F-DP heterodimerization region 230 334 IPR037241 -
Stsc60594g00007 501 PANTHER TRANSCRIPTION FACTOR E2F 93 435 IPR015633 GO:0000978|GO:0006357
Stsc60594g00007 501 CDD E2F_DD 233 334 IPR032198 GO:0046983
Stsc60594g00007 501 Gene3D - 224 334 - -
Stsc60594g00007 501 MobiDBLite consensus disorder prediction 88 118 - -
Stsc60594g00007 501 Coils Coil 230 271 - -
Stsc60594g00007 501 MobiDBLite consensus disorder prediction 1 149 - -
Stsc60594g00007 501 Pfam E2F/DP family winged-helix DNA-binding domain 154 217 IPR003316 GO:0005667|GO:0006355
Stsc60594g00007 501 SMART E2F_TDP_2 152 217 IPR003316 GO:0005667|GO:0006355
Stsc60594g00007 501 Pfam E2F transcription factor CC-MB domain 233 333 IPR032198 GO:0046983
Stsc60594g00007 501 MobiDBLite consensus disorder prediction 125 149 - -
Stsc60594g00007 501 SUPERFAMILY "Winged helix" DNA-binding domain 152 215 IPR036390 -
Stsc60594g00007 501 Gene3D - 146 219 IPR036388 -
Stsc60594g00007 501 MobiDBLite consensus disorder prediction 476 501 - -
Stsc60594g00007 501 MobiDBLite consensus disorder prediction 479 501 - -
Stsc60594g00007 501 FunFam E2F transcription factor 1 146 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60594g00007 Stsc-Chr60594 66759 70854 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60594g00007 17 432 E2F-DP Transcription Factor Family AT2G36010 58.140 1.69e-154 447
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Stsc60594g00007 E2F_CC-MB 5.4e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60594g00007 K06620 - gmx:100811762 638.647