Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60593g00012 ATGGCTGCAGCAGATGTTGAGTTCCGGTGCTTCGTTGGTGGGCTTGCATGGGCCACCGATAACGAAGCTCTAGAGAAAGCCTTCTCTCCCTACGGAGAAATCGTTGAATCGAAGGTTATCAACGATCGCGAAACTGGAAGATCCAGAGGTTTCGGGTTCGTGACCTTTTCTTCTGAGCAATCCATGAGGGATGCGATCGATGGAATGAACGGCTCCAACCTCGATGGCCGTAACATCACTGTCAACGAGGCTCAGTCCCGCGGAGGAGGCGGCGGCGGTGGCGGTGGCTTCAGAAGCGGAGGTGGCGGTGGATATGGTGGTGGCGGATTTAGCCGCGGAGGAGGTGGTGGTGGATATGGCGGCGGTGGCCGTCGTGAAGGTGGATACAACAGAAATGGCGGCGGAGGCTATGGTGGTGGCGGCGGTTATGGCGGTGGCAGGGACCGTGGCTACGGCGATGGTGGCTCCCGTTACTCCAGAGGCGGTGACTCCGATGGCAGCAGCTGGAGGAACTGA 516 0.5911 MAAADVEFRCFVGGLAWATDNEALEKAFSPYGEIVESKVINDRETGRSRGFGFVTFSSEQSMRDAIDGMNGSNLDGRNITVNEAQSRGGGGGGGGGFRSGGGGGYGGGGFSRGGGGGGYGGGGRREGGYNRNGGGGYGGGGGYGGGRDRGYGDGGSRYSRGGDSDGSSWRN 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60593g00012 171 MobiDBLite consensus disorder prediction 69 106 - -
Stsc60593g00012 171 MobiDBLite consensus disorder prediction 69 85 - -
Stsc60593g00012 171 FunFam Glycine-rich RNA-binding protein GRP1A 2 113 - -
Stsc60593g00012 171 SMART rrm1_1 9 82 IPR000504 GO:0003723
Stsc60593g00012 171 MobiDBLite consensus disorder prediction 118 171 - -
Stsc60593g00012 171 Gene3D - 2 106 IPR012677 -
Stsc60593g00012 171 PANTHER GEO13361P1-RELATED 4 161 - -
Stsc60593g00012 171 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Stsc60593g00012 171 CDD RRM2_NsCP33_like 9 84 - -
Stsc60593g00012 171 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Stsc60593g00012 171 SUPERFAMILY RNA-binding domain, RBD 8 118 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60593g00012 Stsc-Chr60593 72734 73959 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60593g00012 2 88 Eukaryotic Initiation Factors Gene Family AT2G23350 32.955 2.18e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60593g00012 - K13195 qsu:112038600 159.073