Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60593g00011 ATGCTATTTTTATGTCAAAAATGCAACCTTTACCTTCTTCCATGCTCCTCTGCACCATTCAAAAGGCACCAAGCTTCAACTTCCACCATTCTTAACTGCCATAACCCACATGCCCAAGATGCCCCAGATGAACATCATCACTACCCCGTTCATCGAAAACACAATTCCAAATCCACAAAATTTCTTATTCATCACCTTTCCCAGAACAACCAGAATCAACAACAACTCAGTGCTACCGAAAAGATTGAACTTGAAGAACACCCCATGATGCCCCACCAAGAAAAGGTGAAGCTTTTGGAGCTTTCCCTTGTTAGGAAGAGGACCCCTCAGTTCCCTGGTTCCATCTATGTTCAGTCCCCAAGTGACCCTGATGTGGGTTCTTCTCTTCCACCTTTGAAGACCCTTTTTCAATCAAGTGCTGACAATGGTGGTGGTGGTGGTGATGGCCATGTTGATGAAGAAGAGGAGGAGAAGATGATAATGCGTGCTGTTGAGATTCGTAGGAAGGTTACTTTGGAGATTTTCAAAGAAGCCATGATGAAGCAGGGAAGGTTTGGAATCACTTACACTACTAACCTGGCTAATAGGCTGCAAGGTTTCCTTGACTATGTTATGATTGAAGCTGCTAGCTTGAAGAGGATTCCAGAATATTCTAACTCTAGTTTCAATTTGCGCGCCAAAACCGTCATCGAAGACTCCCAGGTTGTGCCACTTATCAGATGGTTGAAGCATAATGAGCTATCATATCCTCAGATATCAAAGCTCATTTTGTTGTCAAGAGGAAGAATTGATTTGATAAGGGACCGGGTTCAGTGGTTGAAGTCGCTTCACGTGAAAGGGGAGTTCCTCGGGGTTACACTTGTTAAGGGTGGTGAGAATATTTTGCACCGCAGCTATAAGGAACTCGATGAGATTGTTGAGTATCTGGTGTCCAAAGGAGTCAGGAGAGTCTGGATGGGTTACGTGATTAGTCGATGTCCTCAATTGTTGTCCTACAGCTTAGAAGAAGTGAAGACTCGTGTTGCGTTCTATGTCGACATGGGTATGAATGAGAATGATTTTGGCACAATGGTTTTCGATTTCCCCAGAGCACTTGGTTACTTAACTTTGGAAGAAATGAACCAAAAGGTTAATTACTTGAAAGAATTTGGGCTTGAAAATGAGGATGTTGGCAAGTTGCTAGCATTTAGGCCACATTTGATGGGTTGTAGCATTGAAGAACAATGGAAACCTCTTGTTAAGTATTTTTACTATTATGGAATCACGAAAGATGGCATGAGGAGAATACTTACCCTTAAACCAATGGTCTTCTGTACTGAGTTGAAGTTGAATATTGTGCCAAAGGTAAAATTTTTTCAAGACATAGGGGTTAGAGATGATGCAATTGGCAACATGCTTGTGAAGTTTCCTACTCTACTCACTTACAGCCTCAACAAGAAGATTAGGCCAGTGGTTATATTCTTGATGACCAAAGCTGGAGTGACTGAGAAAGATATAGCCAAGGTTGTAGCTCTGGGACCTGAGCTCTTGGGATGCAGCATTGTACAAAAGCTTGAAGTAAATGTTAAATATTTTTTGTCCCTCGGCATACGCGTCCGGCAGCTAGGTGAGATGATTGCCGATTTCCCATTGCTGCTCAGATACAATCCCGATGTCCTTCGGCCTAAGTATGTTTATTTGCGGCGAACCATGATCCGACCTTTGAAAGATATCATTGAGTTTCCAAGGTTTTTCAGTTATTCTCTTGAAGGGCGAATTATCCCAAGACACAAGGTTCTTGTGGAGAATCAGCTTAATATTAAGCTGAGATACATGTTGGCTAGCAGTGATGTAGAATTCAAGAAACTGGTCAATGCTCTCGTCAGAAAGCGCAAGAAATTTCAGTCAGGTGTCGCCTGCGACGAGGAGGAAGATACTCAATCCGAATCTGTTATTTCAGAGGATATTACTACCACTCTCCAAACATAA 1968 0.4243 MLFLCQKCNLYLLPCSSAPFKRHQASTSTILNCHNPHAQDAPDEHHHYPVHRKHNSKSTKFLIHHLSQNNQNQQQLSATEKIELEEHPMMPHQEKVKLLELSLVRKRTPQFPGSIYVQSPSDPDVGSSLPPLKTLFQSSADNGGGGGDGHVDEEEEEKMIMRAVEIRRKVTLEIFKEAMMKQGRFGITYTTNLANRLQGFLDYVMIEAASLKRIPEYSNSSFNLRAKTVIEDSQVVPLIRWLKHNELSYPQISKLILLSRGRIDLIRDRVQWLKSLHVKGEFLGVTLVKGGENILHRSYKELDEIVEYLVSKGVRRVWMGYVISRCPQLLSYSLEEVKTRVAFYVDMGMNENDFGTMVFDFPRALGYLTLEEMNQKVNYLKEFGLENEDVGKLLAFRPHLMGCSIEEQWKPLVKYFYYYGITKDGMRRILTLKPMVFCTELKLNIVPKVKFFQDIGVRDDAIGNMLVKFPTLLTYSLNKKIRPVVIFLMTKAGVTEKDIAKVVALGPELLGCSIVQKLEVNVKYFLSLGIRVRQLGEMIADFPLLLRYNPDVLRPKYVYLRRTMIRPLKDIIEFPRFFSYSLEGRIIPRHKVLVENQLNIKLRYMLASSDVEFKKLVNALVRKRKKFQSGVACDEEEDTQSESVISEDITTTLQT 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60593g00011 655 MobiDBLite consensus disorder prediction 35 56 - -
Stsc60593g00011 655 Pfam mTERF 347 614 IPR003690 GO:0003690|GO:0006355
Stsc60593g00011 655 Pfam mTERF 262 381 IPR003690 GO:0003690|GO:0006355
Stsc60593g00011 655 SMART mt_12 391 422 IPR003690 GO:0003690|GO:0006355
Stsc60593g00011 655 SMART mt_12 427 458 IPR003690 GO:0003690|GO:0006355
Stsc60593g00011 655 SMART mt_12 568 599 IPR003690 GO:0003690|GO:0006355
Stsc60593g00011 655 SMART mt_12 320 350 IPR003690 GO:0003690|GO:0006355
Stsc60593g00011 655 SMART mt_12 536 566 IPR003690 GO:0003690|GO:0006355
Stsc60593g00011 655 SMART mt_12 463 495 IPR003690 GO:0003690|GO:0006355
Stsc60593g00011 655 SMART mt_12 285 315 IPR003690 GO:0003690|GO:0006355
Stsc60593g00011 655 SMART mt_12 500 531 IPR003690 GO:0003690|GO:0006355
Stsc60593g00011 655 SMART mt_12 355 386 IPR003690 GO:0003690|GO:0006355
Stsc60593g00011 655 MobiDBLite consensus disorder prediction 133 153 - -
Stsc60593g00011 655 PANTHER CGI-12 PROTEIN-RELATED 293 394 IPR003690 GO:0003690|GO:0006355
Stsc60593g00011 655 Gene3D Transcription termination factor 3, mitochondrial 392 628 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60593g00011 Stsc-Chr60593 55141 58051 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Stsc60593g00011 mTERF 1.7e-58 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60593g00011 K15031 - qsa:O6P43_001902 841.262