Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60593g00005 ATGGCGGTCTCCGGCAACTCCTCCGGCGATCCTCTACCTGATTTGAACACAACAACGTCGGTTCTAGGAATGAAGCTCGTCGTTCTAGTTGCGATTATCTTCATTGCAATTGTTGTGACGATCTTACTCATCTTCTTCCTCTGCTTCAGAAGAAGCAGAACCTCCTCCTCTAGCAGAAACCACAGAACCCTCGGCAAGCATAGCTCAGGAACAATTCCTCTCGTTTCAAAGGAGATCAACGTCGTGAAATCCCTAGATCTCGAACAACAACAGCATCAGCAGCAGAAGAAACAGATTCTCGAAGACGTTGTTGTTGTTGATGATCTAAAGAAGAAGGAGGAAGGTGAAGGGATCAAGAATAAGAAGAGTGAGGGAGAAGGGAGTGATGACGTGTCAGTTACGGGTGGAAGAAGGAGTGAGGCGTCGTCGATGTCGGTGGAGGATCCGAACATAGGGTGGGGGAGGTGGTATAGTTTGAGGGAGGTTGAGGTGGCGACACGTGGCTTTGCGGAGGAGAATGTGATTGGTGAAGGTGGTTATGGAATTGTATACAGAGGAGTTCTGCAAGATGGTTCTGTTGTTGCCGTCAAGAATCTTCTCAACAACAAGGGTCAAGCAGAGAAGGAGTTTAAGGTGGAGGTTGAAGCCATTGGAAAAGTAAGGCATAAGAATTTGGTTGGGCTTGTAGGATATTGTGCAGAAGGTCCTAAAAGGATGCTTGTTTATGAGTATGTTAACAATGGAAATTTGGAGCAGTGGCTGCACGGTGATGTAGGACCAGTTAGCCCCTTGACATGGGATATTCGGGTGAAGATTGCCATTGGCACGGCTAAAGGGCTAGCTTATTTGCATGAAGGCTTAGAACCCAAAGTTGTACACCGAGATATAAAATCCAGTAACATTCTTTTGGACAAAAACTGGAACGCCAAAGTATCCGATTTTGGACTTGCCAAGCTCTTAGGATCGGAGAAAACCCATGTGACTACGCGTGTAATGGGAACATTTGGATACGTTTCACCTGAATATGCAAGCACCGGCATGCTTAATGAGCGCAGTGATGTGTATAGCTTCGGAGTTCTACTCATGGAGATAATTACAGGAAGATGCCCCATTGATTATTCTAGACCTCCTGGAGAGATGAATTTGGTTGATTGGTTTAAGGGAATGGTAGCAAATCGTCGTGGCGAAGAGTTAATTGATCCTTTAATTGAGGTTCAGCCCTCTCAAAGATCCCTAAAGCGAATGTTACTCATTTGTCTTCGCTGCATCGACTTGGATGTCGTTAAGCGACCAAAGATGGGTCAAATTGTTCATATGCTTGAGGCAGATGATTTTCCATTTCGTTCTGAAATTCGTACACTTAAAGAGAAAGACCATGTGCTTCCTCATGCAGATGTTTCAAGTAATAGAATTCCATATGAATCAAAATATGCAGAGTCCATAGGAAAATCAAGATGGAAATGA 1464 0.4454 MAVSGNSSGDPLPDLNTTTSVLGMKLVVLVAIIFIAIVVTILLIFFLCFRRSRTSSSSRNHRTLGKHSSGTIPLVSKEINVVKSLDLEQQQHQQQKKQILEDVVVVDDLKKKEEGEGIKNKKSEGEGSDDVSVTGGRRSEASSMSVEDPNIGWGRWYSLREVEVATRGFAEENVIGEGGYGIVYRGVLQDGSVVAVKNLLNNKGQAEKEFKVEVEAIGKVRHKNLVGLVGYCAEGPKRMLVYEYVNNGNLEQWLHGDVGPVSPLTWDIRVKIAIGTAKGLAYLHEGLEPKVVHRDIKSSNILLDKNWNAKVSDFGLAKLLGSEKTHVTTRVMGTFGYVSPEYASTGMLNERSDVYSFGVLLMEIITGRCPIDYSRPPGEMNLVDWFKGMVANRRGEELIDPLIEVQPSQRSLKRMLLICLRCIDLDVVKRPKMGQIVHMLEADDFPFRSEIRTLKEKDHVLPHADVSSNRIPYESKYAESIGKSRWK 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60593g00005 487 Gene3D Phosphorylase Kinase; domain 1 135 244 - -
Stsc60593g00005 487 CDD STKc_IRAK 175 441 - -
Stsc60593g00005 487 MobiDBLite consensus disorder prediction 115 133 - -
Stsc60593g00005 487 FunFam Probable serine/threonine-protein kinase At1g01540 149 244 - -
Stsc60593g00005 487 FunFam Putative receptor-like serine/threonine-protein kinase 245 455 - -
Stsc60593g00005 487 Gene3D Transferase(Phosphotransferase) domain 1 245 453 - -
Stsc60593g00005 487 PANTHER OS01G0323000 PROTEIN 15 458 - -
Stsc60593g00005 487 ProSitePatterns Protein kinases ATP-binding region signature. 175 197 IPR017441 GO:0005524
Stsc60593g00005 487 SMART serkin_6 169 447 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60593g00005 487 MobiDBLite consensus disorder prediction 115 146 - -
Stsc60593g00005 487 Pfam Protein tyrosine and serine/threonine kinase 172 440 IPR001245 GO:0004672|GO:0006468
Stsc60593g00005 487 Coils Coil 82 102 - -
Stsc60593g00005 487 ProSitePatterns Serine/Threonine protein kinases active-site signature. 291 303 IPR008271 GO:0004672|GO:0006468
Stsc60593g00005 487 ProSiteProfiles Protein kinase domain profile. 169 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60593g00005 487 SUPERFAMILY Protein kinase-like (PK-like) 144 441 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60593g00005 Stsc-Chr60593 28802 32188 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60593g00005 117 443 Trihelix Transcription Factor Family AT1G70460 47.289 1.73e-94 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Stsc60593g00005 PK_Tyr_Ser-Thr 3.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60593g00005 - - gmx:100305442 635.18