Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60590g00012 ATGCGAGCTTCATGGGCTGATTTGGCTGCAAATTCTGCAGCTGAGAACGCTGGTGCTGGTACTTCAGCCAACAATGCTGGAACTGGTAACAGTTTACCTCCTTCACGGTCTACTTATGTGCCTCCGCATCTGAGGAACCGGCCTCCATCAGCTGAATCATCTGCCCCTCCAAGTAGTGGTGGCACAACTTCTGGTTCTGGGGCGGGTACAGCTAATGCTGGATCACGTTGGGGTGCACCTCGTGGCGGTGAGTACCGTTCAGGGGGTGGCGGCGGCGGCAGAGGAAGTGGATGGGGGAACAGAAGTGGAGGTTGGGATCGTGGAAGGGACCGTGAGGTTAATCCATTTGGTGATCAGGATGACACAGAGCAGTCATTTGATGAGCAAGAGAACACTGGGATAAATTTTGATGCCTATGAGGACATTCCGGTTGAGACCAGCGGTGATAATGTGCCACCGCCTGTGAATACATTTGCCGAGATTGACTTGGGTGCAGCACTTAATCTTAATATAACAAGGTGCAAATATGTTAAACCGACTCCTGTTCAGCGGCATGCTATACCAATTTCCCTTGCTGGAAGGGATTTGATGGCCTGTGCACAGACTGGTTCTGGAAAGACAGCTGCTTTCTGTTTCCCTATTATCAGTGGAATTTTGAGGGGCCAGCCTATGCAGAGGCCACCTCGTGGTGTGCGTACTGTGTATCCACTCGCCCTTGTTCTCTCACCAACTAGGGAGCTATCAATGCAAATACATGATGAGGCTAGGAAGTTTGCATATCAAACAGGGGTTAAGGTGGTGGTTGCTTACGGTGGAGCTCCAATAAACCAACAGCTACGAGAGCTTGAGAGGGGGGTGGACATTCTTGTTGCAACTCCTGGAAGACTGGTAGATTTGCTGGAGAGAGCTAGAGTTTCACTTCAGATGATAAGATATCTAGCCCTAGATGAGGCAGATAGGATGCTGGATATGGGTTTTGAGCCACAAATAAGGAAGATTGTTGAACAAATGGACATGCCTCCTCCAGGTGTCAGACAGACTATGCTATTCAGTGCCACATTCCCTAAAGAGATACAGAGACTAGCCTCCGATTTCCTGTCAAGATACATTTTTCTTGCTGTTGGAAGAGTTGGGTCGAGTACTGATTTAATTGTCCAAAGAGTTGAGTATGTTCAGGAGTCTGACAAGAGAAGTCATCTCATGGATCTTCTGCATGCACAGAGAGCAAATGGTGTGCAAGGAAAGCAAGCTTTGACTTTAGTTTTTGTGGAGACAAAGAAGGGAGCTGATGCACTGGAACATTGGCTGTGCATTAATGGTTTTCCAGCTACTACTATTCATGGAGATCGGACCCAACAGGAAAGAGAATTGGCATTAAGGTCATTTAAAAGTGGCAACACACCCATATTGGTTGCCACTGATGTGGCTGCACGTGGCCTTGATATTCCTCACGTTGCCCACGTGGTAAACTTTGATCTTCCCAATGATATTGATGACTATGTGCACCGTATTGGAAGGACAGGACGTGCTGGAAAGAAAGGCCTCGCAACTGCATTCTTTAATGAAAACAATGCCAACCTTGCAAGGTCTTTAGCAGAACTAATGCAGGAAGCAAATCAAGAGGTGCCTGCATGGCTTTCACGGTATGCTGCTCGATCTTCATTTGGAGGTAGGAACCGTCGTTCAGGAGGAGGGCGATTTGGTGGCCGAGACTTTCGAAGAGATAATTCCTTCAATAGGGGTGGTTCTGATTACTACAGTGCTGGAAACAGCAGTGGTGGATATGGGGCATCTGGTGGATACGGTGGAGGATATGGTCCCGGGACCAGTGCATGGGATTAA 1842 0.4821 MRASWADLAANSAAENAGAGTSANNAGTGNSLPPSRSTYVPPHLRNRPPSAESSAPPSSGGTTSGSGAGTANAGSRWGAPRGGEYRSGGGGGGRGSGWGNRSGGWDRGRDREVNPFGDQDDTEQSFDEQENTGINFDAYEDIPVETSGDNVPPPVNTFAEIDLGAALNLNITRCKYVKPTPVQRHAIPISLAGRDLMACAQTGSGKTAAFCFPIISGILRGQPMQRPPRGVRTVYPLALVLSPTRELSMQIHDEARKFAYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGVRQTMLFSATFPKEIQRLASDFLSRYIFLAVGRVGSSTDLIVQRVEYVQESDKRSHLMDLLHAQRANGVQGKQALTLVFVETKKGADALEHWLCINGFPATTIHGDRTQQERELALRSFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNENNANLARSLAELMQEANQEVPAWLSRYAARSSFGGRNRRSGGGRFGGRDFRRDNSFNRGGSDYYSAGNSSGGYGASGGYGGGYGPGTSAWD 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60590g00012 613 FunFam Probable ATP-dependent RNA helicase DDX4 119 374 - -
Stsc60590g00012 613 FunFam ATP-dependent RNA helicase RhlB 375 554 - -
Stsc60590g00012 613 Gene3D - 112 374 IPR027417 -
Stsc60590g00012 613 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 126 550 - -
Stsc60590g00012 613 Pfam Helicase conserved C-terminal domain 396 511 IPR001650 -
Stsc60590g00012 613 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 383 550 IPR001650 -
Stsc60590g00012 613 MobiDBLite consensus disorder prediction 51 71 - -
Stsc60590g00012 613 SMART ultradead3 175 387 IPR014001 -
Stsc60590g00012 613 MobiDBLite consensus disorder prediction 15 37 - -
Stsc60590g00012 613 Pfam DEAD/DEAH box helicase 180 361 IPR011545 GO:0003676|GO:0005524
Stsc60590g00012 613 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 156 184 IPR014014 GO:0003724
Stsc60590g00012 613 Gene3D - 375 554 IPR027417 -
Stsc60590g00012 613 CDD DEADc_DDX3_DDX4 157 378 IPR044763 GO:0003724|GO:0005524
Stsc60590g00012 613 SMART helicmild6 430 511 IPR001650 -
Stsc60590g00012 613 CDD SF2_C_DEAD 384 520 - -
Stsc60590g00012 613 MobiDBLite consensus disorder prediction 588 613 - -
Stsc60590g00012 613 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 187 372 IPR014001 -
Stsc60590g00012 613 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 237 527 IPR027417 -
Stsc60590g00012 613 MobiDBLite consensus disorder prediction 1 131 - -
Stsc60590g00012 613 MobiDBLite consensus disorder prediction 104 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60590g00012 Stsc-Chr60590 72334 77397 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60590g00012 154 543 Eukaryotic Initiation Factors Gene Family AT3G19760 31.714 1.51e-61 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60590g00012 K11594 - gmx:100795756 917.146