Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60589g00012 ATGGATGAAATTCAGAGGGAGAAAATCTATGTTGGTGTTGGAATTGATATGCAAGATGGATTCAAGGTTTTGAATTGGGTTCTCAAGAATTGGAACAATGATAATAATTCTCATCCAATTTCTATTGTTATTCTCCATGTTGCTCACAACTTTTCCAATGATTATGTTTATACACCATTTGGGAAACTTCCAGCAAGATCTGTGAATGAAGAAAAGCTTCAAGTTCTAAAAAAGTATGAACAAGATAAAATCATGAAGCTTTTCTCCAAGTATGTTGCATATTGTGGTAAAGCCAAGGTTCCGGCAGAAATTCTTCAAGTTGAGAAAGTTGATGAACCAATCCAAAAGCGCATCATAGAATTGATCTTTAGCCTTGGAATTACCAAATTGGTCATTGGCTTTTCCTTCATGAAGCCCTCCTTGAAATCAAGAAGTGCCATAAGTGGATTGTTCTATGTTCACCAGCACAAGCCATCATTCTGTGAATTGTTCATAGTTTGTGGTGAGAAACAAGTGTTCCTAAGAGCAAAACACAATGAAGAGAAAATCATGGAGGATGAAAATGGTGTAACGGTAGCAAGGTTAAGAGACAAGGTAACCTTCAAAGATTGGCTTGAGAAGATAATAATGAATAATAATAAATCCAATAATAATAATAATGCATCAACTTCATCATCATCATCACAAGTTACTCAGAACCAATGGGAATTTTATCTACAAGAAATTGATAATTACTACCAAGAATTGTTGTTGATGTCATTCTCCAATTTGGATGAGAGAAGAAGTAGCTGTGTGCAAGAAGATGAAAATGATGGGTCATCACAGATTGGTCCAATTGTGACAGGCGTAATTAATGAACAGAACAATTCTTCTTCTAATAAGAGTGCCACAGAAAAAATAGAGCTCCTACAAAATAAATTGAATGAAGCTCAAATGACAATCCAATTGAAGAGGAAAGAAGCCAAGGATCATATGGAGAGACGCACAAAAGCAGAATGGGCAATTTGTTTATGCAATAGTAGGGCTGAAGAACTTGAATCAAGAATAAAGGAAGAAGTGAGCTTAAAAGAAGAGACAAAGAAGGAAGCAGAGCAAGAGAAAGAAGAAACACACGAGATTCGAGTTGAAGTGGAAGAGAGCAAGAGGAGGCTGACGTCACTATCGGAGCTCCATTCCGAGCTCTCGAAGAGGCTGCACGTGTCAAAGATAGCGAAGTCACGTGCGGAGACGCAGCTGGAGAAGGCGATTGCGGAGAGATCTGAGATGGTGAGGGAGATAGAGGAGCTGCGGAGACAGAAGGATGTGCTCAACAGAAGGATCGAATTCTGCAAACAGAAAGACGCAATTGGAATGGCGGCGAGGTTGATGAGCCAAGAAGAGGAGGAGGCGTGTGGTTTCAGGGAGTATTCGGAGGAGGAGGTGCGGCTGGCGACGGAGAACTTTTCGGAGAGGGTTAGGTTGAAGTCCGGTGGTGATTGGAGCAATGTGTATAAAGGACGAATGATTCATTCCACCGTTGCCATCAAGATGCTTCCCTCTTCTTTCTCCCATCAGCATTTTCATGATAAGGTGAGAATTCTTGGTGATATTAGGCATCCTCATCTGATTGCTATGGTGGGCTTTTGCTCTGAGCCCAAGTGCATAGTAATGGAATACATGCACAACGGAAGCTTACGAGACATACTATTTTCTAGGAGAAGAAACCGGGCTTTAAAGTGGTACGATCGGATACGAATCGCTACCGAAGTTTGCTCGGGCCTAAGCTTTCTTAATTCAGTTAAACCAAGGCCCGCCATCCACTGTCACTTGACCCTATCCAACATCCTCCTAGACCGGAACTATGTACCCAAGATCACGGGCTTTGGGCTTCACGACTGCCAGAACGAGGAATGTAACGTTGAGTCAGATATCCGGGCCTTGGGGGGTTTGTTGCTACACCTTCTAACAGGAAGTAATTGGGCCGGGCTTGTTGAGGAGGCCATGTTGGTAGACATGGATAGAGAAGCATTTGTTGGGGTTCTTGATGAGATGGCTGGACCATGGCCGTTGGATCTGGCTAAAGAGATTGCGGGCCTAGGGATGAGGTGCATGTCCATAAAGGAATGGCCCAGCCCAGAGTTGAGTATTGGAATGGTGATGGAAGAGCTGAGAGAGATTAGAAGAAAGGGTGATGAGATTGTAGCAAGAGAAGGAAGGAGGGTACTCAGAGGTGGAGGTGGAGGTGGAGATTGCTCAAGTGATATACCCACCGTTTATCTGTGTCCTATACTTCAGGATGTAATGAAGAACCCACACGTGGCAGCAGATGGGTTTTCATACGAGCTAGAAGCAATAGAACACTGGTTGCAAACGGGACATGACACGTCACCAATGACAAACCTGAGGCTCAAGCACACATTCCTCACCCCAAATCACAGCCTTCGCTCCCTAATTGAAGATTGGCGTAGCAATAATACATCATCTGAACTTGTAAATTAG 2478 0.4302 MDEIQREKIYVGVGIDMQDGFKVLNWVLKNWNNDNNSHPISIVILHVAHNFSNDYVYTPFGKLPARSVNEEKLQVLKKYEQDKIMKLFSKYVAYCGKAKVPAEILQVEKVDEPIQKRIIELIFSLGITKLVIGFSFMKPSLKSRSAISGLFYVHQHKPSFCELFIVCGEKQVFLRAKHNEEKIMEDENGVTVARLRDKVTFKDWLEKIIMNNNKSNNNNNASTSSSSSQVTQNQWEFYLQEIDNYYQELLLMSFSNLDERRSSCVQEDENDGSSQIGPIVTGVINEQNNSSSNKSATEKIELLQNKLNEAQMTIQLKRKEAKDHMERRTKAEWAICLCNSRAEELESRIKEEVSLKEETKKEAEQEKEETHEIRVEVEESKRRLTSLSELHSELSKRLHVSKIAKSRAETQLEKAIAERSEMVREIEELRRQKDVLNRRIEFCKQKDAIGMAARLMSQEEEEACGFREYSEEEVRLATENFSERVRLKSGGDWSNVYKGRMIHSTVAIKMLPSSFSHQHFHDKVRILGDIRHPHLIAMVGFCSEPKCIVMEYMHNGSLRDILFSRRRNRALKWYDRIRIATEVCSGLSFLNSVKPRPAIHCHLTLSNILLDRNYVPKITGFGLHDCQNEECNVESDIRALGGLLLHLLTGSNWAGLVEEAMLVDMDREAFVGVLDEMAGPWPLDLAKEIAGLGMRCMSIKEWPSPELSIGMVMEELREIRRKGDEIVAREGRRVLRGGGGGGDCSSDIPTVYLCPILQDVMKNPHVAADGFSYELEAIEHWLQTGHDTSPMTNLRLKHTFLTPNHSLRSLIEDWRSNNTSSELVN 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60589g00012 825 SMART Ubox_2 751 814 IPR003613 GO:0004842|GO:0016567
Stsc60589g00012 825 Coils Coil 405 446 - -
Stsc60589g00012 825 Gene3D Transferase(Phosphotransferase) domain 1 467 724 - -
Stsc60589g00012 825 Coils Coil 293 327 - -
Stsc60589g00012 825 ProSiteProfiles U-box domain profile. 747 821 IPR003613 GO:0004842|GO:0016567
Stsc60589g00012 825 ProSiteProfiles Protein kinase domain profile. 482 825 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60589g00012 825 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 746 822 IPR013083 -
Stsc60589g00012 825 SUPERFAMILY Protein kinase-like (PK-like) 465 699 IPR011009 -
Stsc60589g00012 825 Coils Coil 342 397 - -
Stsc60589g00012 825 CDD RING-Ubox_WDSUB1-like 749 804 - -
Stsc60589g00012 825 SUPERFAMILY RING/U-box 740 818 - -
Stsc60589g00012 825 Pfam U-box domain 748 818 IPR003613 GO:0004842|GO:0016567
Stsc60589g00012 825 PANTHER OS02G0152300 PROTEIN 9 812 - -
Stsc60589g00012 825 Pfam Protein tyrosine and serine/threonine kinase 491 628 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60589g00012 Stsc-Chr60589 74860 80775 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60589g00012 7 820 U-box Gene Family AT5G65500 47.636 0.0 741
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Stsc60589g00012 PK_Tyr_Ser-Thr 3.8e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60589g00012 - - ahf:112747336 1292.33