Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60589g00003 ATGGCCCTTCCCGGTTCTCTGCAGCTGACCCATGGACTGGGACTTTGCAGGAAACCAGGCCGCAATAAACATCCGTCGGCTGTGGGAAGAAGCAAGCTACATTTACCGAATACAGGTCCATCATATCCTCTTTCGTTCATGAAAATGGATAGCTGGGGTCTTCGACACTTCCATCACATAAACCGGCCAACACATAGATTATCTTACAAGTCTAGCCCATTTACGTGCCATTCTCTTCTAGTACCAAGCCAACCAAGTGAGCTACCTGTTGTTAAGGTGGCTGCTACCTTTCTGGCAAGGTCCATTAATCAGATACAAAGTAACCCTGTAATATTAAAGTTGATTCCTTCAGTTGCCATTATCATTTTTGCAACATGGGGTGTTGGCCCATTAGCCTGTCAGACAAGGAAATTGCTTTTCCAGAGGAGTGATAATAATTGGAAGAAAAGTAGAACACATTATATAGTAACTTCATACCTTCGGCCATTACTTTTGTGGACTGGAGCGATACTCTTTTGCAGAGCATTGGAACCAGTAATTCTACCTACAGAAACTAGCCAGGTTATTAAGGAACGGCTTCTGCATTTTGTTAGATCATTGTCAACCGTTCTGGCCTTTGCATATTGTTTATCAAGTGTGATTCAGCAAATACAGAAATTCTTCGCTGAGAGCACTGATCCAAGTGAGACGAGAAATATGGGATTCCAATTCGCAGGAAAAGCTGTCTATTCAGCAGTATGGATTGCAGCCTTTTCCCTGTTCATGGAATTGCTAGGGTTCTCTACACAGAGATGGGTTACTGCTGGAGGTCTTGGGACAGTTTTGTTGACTCTTGCCGGTCGAGAGATATTTACAAATTTCCTTTCAAGTGCGATGATCCATGCAACTCGTCCTTTTGTGATTAATGAGTGGATTCAAACAAAGATTGAAGGCTATGAGGTTTCTGGTACCGTTGAGCATGTTGGTTGGTGGTCACCTACTATTGTAAGAGGTGAAGATGGTGAAGCTGTGCATATTCCAAACCACAAATTTACAGTGAATGTTGTGCGAAACCTTACTCAGAAAACACATTGGCGAATCAAAACCCATTTAGCCATTAGTCATTTGGATGTAAAAAAGATTAATAATATTGTTGCTGATATGCGAAAAGTACTAGCAAAAAACCCTCAAGTTGAGCAGCAGAGGTTGCACAGGAGGGTTTTCCTTGACAATATAAATCCTGAAAATCAGGCCCTTCTGATATTGGTGTCATGTTTCGTCAAGACTTCACATTTTGAAGAATATTTATGTGTTAAGGAAGCTATACTGTTGGATCTTCTTAGAGTTATTGGCCATCACAGAGCCCGTCTTGCAACACCAGTTCGCACCCTGCAGAAAATATACAGTGATGCTGACTTGGACAACATACCATACTCAGATTCCGCTGGTGCCGGAACTGTATCTAACCGTCCATTATTAATGATTGAGTCACCTAGCAAGATCAGTGCGGATGATAAAGGAAAAGTCAGATCAGTACGTTCAGCTGGAGATCAAGATAACAAGACAATCGCGCCAACCAGACTTGAATCCAAGGTTGGTTCAACAGGAATACAAGATGACCCCGAGGTAGATGCCAAGGTCGCTACATCTAGTGCTAACACAAACGGAAATGCCAAAACTGCGTCGACACCCAAGCCTGACCCTGAAATGGTTGAGAACAAGCCACTAAAACCAGATTCCAAGGGTCAGACTGTTAAAAACATCAAGGCTAACATGGAATCCGAGAGCGTAGTTTCCTCCTCGGGAACAGGCAGCACCGATAAAGCCAGTGGTGTCCCTACGAATACACCAACAAAGCAGCAAGGGGAAAGGAAACCGGCTACACAACAACCCGCTCCTCCACTTTCTCCGGCATCAAGGCCTGTTCTTGAAGAGAATATAGTACTTGGTGTTGCATTGGAGGGATCAAAGAGGACCCTTCCTATGGAGGAGGGTATCGAGAATTCTGCAACTAGAGAGGCAAAGGAAATGGCTGCATCCCATGGCGGAAATGGATCTCCAAAGGGCGGCGATGGAAATGACAAATAA 2067 0.4388 MALPGSLQLTHGLGLCRKPGRNKHPSAVGRSKLHLPNTGPSYPLSFMKMDSWGLRHFHHINRPTHRLSYKSSPFTCHSLLVPSQPSELPVVKVAATFLARSINQIQSNPVILKLIPSVAIIIFATWGVGPLACQTRKLLFQRSDNNWKKSRTHYIVTSYLRPLLLWTGAILFCRALEPVILPTETSQVIKERLLHFVRSLSTVLAFAYCLSSVIQQIQKFFAESTDPSETRNMGFQFAGKAVYSAVWIAAFSLFMELLGFSTQRWVTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVINEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDGEAVHIPNHKFTVNVVRNLTQKTHWRIKTHLAISHLDVKKINNIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLILVSCFVKTSHFEEYLCVKEAILLDLLRVIGHHRARLATPVRTLQKIYSDADLDNIPYSDSAGAGTVSNRPLLMIESPSKISADDKGKVRSVRSAGDQDNKTIAPTRLESKVGSTGIQDDPEVDAKVATSSANTNGNAKTASTPKPDPEMVENKPLKPDSKGQTVKNIKANMESESVVSSSGTGSTDKASGVPTNTPTKQQGERKPATQQPAPPLSPASRPVLEENIVLGVALEGSKRTLPMEEGIENSATREAKEMAASHGGNGSPKGGDGNDK 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60589g00003 688 MobiDBLite consensus disorder prediction 494 508 - -
Stsc60589g00003 688 Gene3D - 194 297 - -
Stsc60589g00003 688 MobiDBLite consensus disorder prediction 509 526 - -
Stsc60589g00003 688 MobiDBLite consensus disorder prediction 577 620 - -
Stsc60589g00003 688 MobiDBLite consensus disorder prediction 540 555 - -
Stsc60589g00003 688 SUPERFAMILY Sm-like ribonucleoproteins 283 353 IPR010920 -
Stsc60589g00003 688 Gene3D - 298 351 IPR023408 -
Stsc60589g00003 688 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 674 IPR045042 -
Stsc60589g00003 688 Pfam Mechanosensitive ion channel 240 446 IPR006685 GO:0016020|GO:0055085
Stsc60589g00003 688 MobiDBLite consensus disorder prediction 491 688 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60589g00003 Stsc-Chr60589 17613 23216 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60589g00003 9 678 Mechanosensitive Ion Channel Family AT5G10490 55.800 0.0 720
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60589g00003 K22047 - gmx:100789444 986.482