Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60588g00001 ATGGTTTCAAACCGACGCTGTCTTCTTAAAGGGTCTGTTATATCCCCATCTCTGGCATTCGCTCCGGCCATTCATCCCAGAGGAGAAACACTTGGCCCTGTCCATCATGGACAGTCACGGAGAAGCAATGCACCGAGCTACCCAGCGGATCCATACGGGTTTGTCCTATCTCCAAATCCATCAACTTTGCCTGTGAATCCTTCCCCTAGAACCATTGCTCCGAGCTCTCTGGAAGTACCAAATGGGTCATTCTTGCCTACTCCAGTTTCATCTCCTTTTCCTTCAATATCTCCGGGTACTAGTCCAACCACCATAACATTATCACCTCCGCACGAGGCTGCCCCTATATCGGCAACTGATCAAGGGAATGCACCACCACTTCCATCGATACAACTGAGTCCACCTCAAAGGAAAGTACCTCCTGTTAGGCCTCCTGAACCTTCTCCAATTTCTCCAGGTAAAACACTGTGCAGTTCCTTTTCTTTGGGGGAAGAGATACAACTACATCTTCCATTTGATATTGACCAAATTCAACCACCAGAACCTTTTGGCAAGCTGCCAAATAATTCACCAGTGAACCAACCAATTGAACATGGAAGTTCGCCCCCTATGGTAGAGAAGAGGAATGCTAGCAAGAGTCTCACCCCAGACCGAATCTCGCCAGCTCCAACTGCAGTACCATCTTCCAAATTGCCTAAGGTTTCACCAGTAAGTCAACCAGTTGAAAATGGCAGTTTCCCTCCTAATATTCACAGAGAGGGTCCAAAGAAAGGCCATTCACTGAAGCCAATTGCACCAGCTCCTGTTGCAGTCAGTTTGCCCAAATTTCCACCTAGTCAGCCACCTGAACTTGGAAGCTCGCCTCCAACTGTTCACGAGAACAATTCCAGTGCCGGTCACAAACAGGAGCCAGTTTCACAAGTTGCTTTTCCTCCTGCAACTTTGCCAGAAAATTCACCGGTGAGCCAACCGATTCATCAAAGAAGTTTTCCTCCGAATGTTCACAACAGAACTGTATCAACTAACACTCCCACCCCAGAGCCAGTATCACCAAACTCTTCTGCATCCCCGCCGTCGAAAACGGAAAATAACCATCCAATAGGCCATCCTGTTCTTCCAAAAATAACTCCATCCATATCACCTGCACAAGTTACACCACCAAAAATTGCACATCCAAGAAATCCACCACCTTTCCACCCAGTTATACCAGCAGCATCTCCATCGAAATTACCAGCACCTGTTGTGTTTCCCACACTGACTCCCTCCAGAAGATCTAATTGGAAAAGTACTGGCACACCAGTTTCAGCACCATTGTACAAAACACCAAAGCCACTACCAGCTATAATAGTACATTCCCCTGTTCAAGTTCCAGTTGCTTCGCCTCCTGTGAATTTGCCCGAAAATTCACCTGCCAGCCAACCTATTCATCAAGGAAGTTTTCCTCCCAATGTTCATAACAAAACTGTAAATAAGGGCCATGCTAACACTCCCACCACCGAGCCAGTATCACCAATTGCATCCCCGCCGTCAAAAACGGAAAATAACCATCCAATAGGCCGTCCTGTTCTTCCAAAAATAACTCCATCCATATCACCTGCACAAGTTACACCACCAAAAACTGCATATCCAATAAATCCACCACCTTTTCACCCCATGATACCAGCAGTATCTCCATCAAAATTACCAGTCCCAGTTGCATCACCTCCTGTGAATTTGCCTGAAAATTCACCAATCAGCCAACCTATTCGTAAAGGAAGTTTAGCTCCTGTTGTTCATAACAGAACTGAAAATAAGGGTCATATTCACACCCAAGAACCAGCATCAACAAATTTTCTTGCACCCCCACCATGGAAAATGGAAAATAGCCAGCCAGTTGGCAGTCCTGTTTTTCCAAATATAACTCCCTCCATATCACCTGCACAAGTTGCACCACCACCTTTCCACCAAGTTATACCAACAGTATCTCCATCAAAATTGCCAGCACCTGTTGTCTCTCCAGCTGTAACTCCTCCTGGAAGCTTTGATTGGAAACGAAATGGAGAACCAGTTTCGGCACCTTTGTACAAAGTACCAAAGCCGCTACCAGCTGTAGTACATTCTCCTGTTCAAGCCCCTTCTGTACATAATTCAAGGCAGTTTCATCATGCTTCCGTGCCCCCGGTTTCTTCCCCCAAATCTGCTTCAAATAAAGAAGATCATTCTCCTGCATCTCCACCTTTAACCACGTCTTATAAGCATCACTACGCAAGGAGTATAGCCACCAGCCCTGCTCCTACATCATCATATTTCATTTCTCCTCCGACTTCAGTCCACGAAGATCACCCAATTCCTCCTTCATCACTGCCGACAACTGGAAGAACACATCATGCTCCACCACCATCAAACACAGGTTCTTCAGTTTCCCCGTTTGCATTCCCTGTTACATCACCTGCCAGCCAGGTTTCGCCTGCTCCTTCTCCATCCTTCATAATATCCCCTCACCCAACCAAAATTCTATTTCATCCTCCTAAAGTAGCCCCTTCTCGGTCTCCTTCCGAGAGTCCTAAGAAGCCAATCCTGCCTCAAATTCACACACTGCCACCGCCGCCTCCTAACGAAGATTGTTTATCAACTATTTGCTCAGAGCCTTACACAAATTCTCCACCTGGAGCACCTTGCAGATGTGTTCTGCCCATGAAAGTTGGTCTTCGCCTTGGTGTTTCTCTGTATACCTTCTTCCCTTTGGTTTCAGAGCTTGCTTTGGAGATTGCTGCTGGGGTTTCCATGACACAAAGTCAAGTTCGGATCATGGGAGCCGAAGCGGCAAGCCAAGATCCAGACAAAACTGATGCTCTCATTTTCTTGGTGCCGATTGGGGAAGGCTTTGATCACACCACAGCCTTATTGAATTCTGAGAGATTTTGGCAGAAAAAGGTTGCAATAAAATCTTCTTACTTTGGTAGCTATGAAGTCTTATATGTTAGCTATCCAGGTTTACCACCATCTCCTCCTATACCACCTTCTAGCATTTCCATGATAGATGGTGGTCCATATTCAAGTAATGGCAACAATGGAAGAATGATAAAGCCCCTTGGCGTCGACATACAGAAGAGGCAGCACAAAGGTGGACTTAGTCGGGGCATCATTGCAATTCTTGTTCTATCGGTGCTTCTCGCCGTTGTTTTATTATTGGCTGCTGGTTTGGCCTTGTTCAAGTACAGACATCATGTAAGCCAGCCGACATCAACCCCGCGTGTTTCTCCACGTTCCTTTGCCAAAACACAAGGAACTACCGAATCATTAGCAGCTGGTGGACTTGCTTCGGCCTCATCATCATTTCGATCTAGCATTGCTGCTTACAAAGGATCTGCTAAGACTTTCAGTGCGAATGACATCGAGAAAGCAACCGATAACTTTAATGATTCAAGGATACTTGGAGAAGGCGGTTTTGGTCGGGTTTATAGCGGTATCTTTGAAGATGGGACAAAAGCAGCAGTCAAGGTTCTTAAAAGGGAGGATCATCATGGTGATCGTGAATTCCTAGCTGAAGTTGAGATGCTTAGCCGCCTTCACCACCGAAATTTGGTTAAGTTGATTGGTATATGCACCGAGGTTAGCTTCCGCTGCCTGGTCTATGAACTCATTCCAAATGGCAGCGTGGAATCTCATTTACACGGAGTTGACAGGGAAAACAGTCCACTTGATTGGAGTGCTAGGATTAAGATCGCACTCGGTGCAGCACGCGGCCTGGCTTATCTGCATGAAGATTCGAGCCCCCCTGTCATACACAGGGACTTCAAGTCTAGTAATATCTTGTTGGAAGATGATTTTACCCCAAAAGTATCTGATTTTGGACTAGCTAGAACTGCGGCCGACGAAGAGAACAGACACATATCAACCCGTGTCATGGGAACTTTCGGATATGTGGCTCCGGAGTATGCAATGACTGGCCATCTTCTTGTGAAGAGTGATGTCTACAGCTATGGTGTTGTTCTTCTTGAGCTTTTGACAGGAAGAAAACCAGTAGATATGTCGCAAGGCCCCGGTCAAGAGAATCTCGTCGCATGGGCTCGTCCCTTACTCACAAGTAAAGAAGGATTGGAAGCAATAATAGACCCATCTCTGGGGACTGATGTGCCTTGGGATAGTGTGGCCAAAGTTGCAGCCATTGCTTCAATGTGTGTTCAACCAGAGGTCTCGGACCGGCCTTTCATGGGTGAGGTTGTTCAGGCTCTAAAACTTGTGAGCAATGAATGTGATGAAGCAAAAGAATCAGGTACTAGAAATCCTAGCCAGGAGGATTTATCTGTTGATTTTGACAATGTTTCTAGTCAACTACCTGATCATTTCCAACGGCAATTCTCCGCCGCGAACTATGCTTCGGGAAATGATATCGAAAAAGGCTTGTCATCATTAGAGATATTCAGCTCATCAGCAAGATTTAGAAGGCAAGATTCTGGATCATTTCGACGGCACTCCTATTCGGGTCCTTTGAGGACCGGAAGAAGCCCGAGGTTGTGGCAGGTCATTGGCCGGCTTTCGGGTAGTGTAAGTGAACACAGAACCATCTCCAAGTTATGA 4560 0.4629 MVSNRRCLLKGSVISPSLAFAPAIHPRGETLGPVHHGQSRRSNAPSYPADPYGFVLSPNPSTLPVNPSPRTIAPSSLEVPNGSFLPTPVSSPFPSISPGTSPTTITLSPPHEAAPISATDQGNAPPLPSIQLSPPQRKVPPVRPPEPSPISPGKTLCSSFSLGEEIQLHLPFDIDQIQPPEPFGKLPNNSPVNQPIEHGSSPPMVEKRNASKSLTPDRISPAPTAVPSSKLPKVSPVSQPVENGSFPPNIHREGPKKGHSLKPIAPAPVAVSLPKFPPSQPPELGSSPPTVHENNSSAGHKQEPVSQVAFPPATLPENSPVSQPIHQRSFPPNVHNRTVSTNTPTPEPVSPNSSASPPSKTENNHPIGHPVLPKITPSISPAQVTPPKIAHPRNPPPFHPVIPAASPSKLPAPVVFPTLTPSRRSNWKSTGTPVSAPLYKTPKPLPAIIVHSPVQVPVASPPVNLPENSPASQPIHQGSFPPNVHNKTVNKGHANTPTTEPVSPIASPPSKTENNHPIGRPVLPKITPSISPAQVTPPKTAYPINPPPFHPMIPAVSPSKLPVPVASPPVNLPENSPISQPIRKGSLAPVVHNRTENKGHIHTQEPASTNFLAPPPWKMENSQPVGSPVFPNITPSISPAQVAPPPFHQVIPTVSPSKLPAPVVSPAVTPPGSFDWKRNGEPVSAPLYKVPKPLPAVVHSPVQAPSVHNSRQFHHASVPPVSSPKSASNKEDHSPASPPLTTSYKHHYARSIATSPAPTSSYFISPPTSVHEDHPIPPSSLPTTGRTHHAPPPSNTGSSVSPFAFPVTSPASQVSPAPSPSFIISPHPTKILFHPPKVAPSRSPSESPKKPILPQIHTLPPPPPNEDCLSTICSEPYTNSPPGAPCRCVLPMKVGLRLGVSLYTFFPLVSELALEIAAGVSMTQSQVRIMGAEAASQDPDKTDALIFLVPIGEGFDHTTALLNSERFWQKKVAIKSSYFGSYEVLYVSYPGLPPSPPIPPSSISMIDGGPYSSNGNNGRMIKPLGVDIQKRQHKGGLSRGIIAILVLSVLLAVVLLLAAGLALFKYRHHVSQPTSTPRVSPRSFAKTQGTTESLAAGGLASASSSFRSSIAAYKGSAKTFSANDIEKATDNFNDSRILGEGGFGRVYSGIFEDGTKAAVKVLKREDHHGDREFLAEVEMLSRLHHRNLVKLIGICTEVSFRCLVYELIPNGSVESHLHGVDRENSPLDWSARIKIALGAARGLAYLHEDSSPPVIHRDFKSSNILLEDDFTPKVSDFGLARTAADEENRHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSQGPGQENLVAWARPLLTSKEGLEAIIDPSLGTDVPWDSVAKVAAIASMCVQPEVSDRPFMGEVVQALKLVSNECDEAKESGTRNPSQEDLSVDFDNVSSQLPDHFQRQFSAANYASGNDIEKGLSSLEIFSSSARFRRQDSGSFRRHSYSGPLRTGRSPRLWQVIGRLSGSVSEHRTISKL 1519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60588g00001 1519 ProSiteProfiles Protein kinase domain profile. 1132 1408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60588g00001 1519 FunFam receptor-like serine/threonine-protein kinase ALE2 1105 1207 - -
Stsc60588g00001 1519 MobiDBLite consensus disorder prediction 89 110 - -
Stsc60588g00001 1519 FunFam Receptor-like serine/threonine-protein kinase ALE2 1208 1424 - -
Stsc60588g00001 1519 MobiDBLite consensus disorder prediction 29 52 - -
Stsc60588g00001 1519 MobiDBLite consensus disorder prediction 286 303 - -
Stsc60588g00001 1519 MobiDBLite consensus disorder prediction 270 285 - -
Stsc60588g00001 1519 MobiDBLite consensus disorder prediction 705 741 - -
Stsc60588g00001 1519 ProSitePatterns Protein kinases ATP-binding region signature. 1138 1160 IPR017441 GO:0005524
Stsc60588g00001 1519 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1254 1266 IPR008271 GO:0004672|GO:0006468
Stsc60588g00001 1519 MobiDBLite consensus disorder prediction 388 407 - -
Stsc60588g00001 1519 MobiDBLite consensus disorder prediction 175 441 - -
Stsc60588g00001 1519 MobiDBLite consensus disorder prediction 490 514 - -
Stsc60588g00001 1519 MobiDBLite consensus disorder prediction 490 515 - -
Stsc60588g00001 1519 MobiDBLite consensus disorder prediction 89 157 - -
Stsc60588g00001 1519 Pfam Protein tyrosine and serine/threonine kinase 1136 1405 IPR001245 GO:0004672|GO:0006468
Stsc60588g00001 1519 SUPERFAMILY Protein kinase-like (PK-like) 1113 1406 IPR011009 -
Stsc60588g00001 1519 Gene3D Transferase(Phosphotransferase) domain 1 1208 1431 - -
Stsc60588g00001 1519 PANTHER OS01G0750732 PROTEIN 860 1433 - -
Stsc60588g00001 1519 MobiDBLite consensus disorder prediction 128 151 - -
Stsc60588g00001 1519 MobiDBLite consensus disorder prediction 705 742 - -
Stsc60588g00001 1519 MobiDBLite consensus disorder prediction 319 363 - -
Stsc60588g00001 1519 MobiDBLite consensus disorder prediction 780 820 - -
Stsc60588g00001 1519 MobiDBLite consensus disorder prediction 756 820 - -
Stsc60588g00001 1519 CDD STKc_IRAK 1138 1406 - -
Stsc60588g00001 1519 Gene3D Phosphorylase Kinase; domain 1 1104 1207 - -
Stsc60588g00001 1519 MobiDBLite consensus disorder prediction 834 861 - -
Stsc60588g00001 1519 MobiDBLite consensus disorder prediction 231 245 - -
Stsc60588g00001 1519 MobiDBLite consensus disorder prediction 419 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60588g00001 Stsc-Chr60588 11435 20471 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60588g00001 263 448 Receptor kinase-like Gene Family AT5G56890 30.332 3.32e-07 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Stsc60588g00001 PK_Tyr_Ser-Thr 9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60588g00001 - - lang:109328269 1432.93