Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc60587g00002 | ATGTCTAACACCAGCAACAATGTGGCTGGGGTTGACAACACCTTCAGAAGAAAATTCGATCGAGAAGAGTATTTGGAACGAGCTCGGGAGCGTGAGAGGCAGGAGGAGGAGGCTAGATCCAAACCCAAAGGGAAAGGTCCTCCAGTGCAGAGGAAACCCTTAAAACATAGAGATTATGAAGTGGACCTCGAGTCCCGCCTGGGCAAGACTCAAGTTGTTACGCCTGTTGCACCACTGAGTCAGCAGGCTGGATATTACTGCTCTGTTTGTGAGTGTGTGGTAAAGGATTCAGCGAACTACTTAGATCATATTAATGGAAAGAAACATCAAAGAGCTTTGGGCATGTCTATGCGAGTTGAACGTGCCTCTCTACAACAGGTTCAGGAACGATTCGAGGTTCTTAAGAAACGTAAAGATCTTGGCACATTCACTGAGCAAGATCTTGACGACAGGGTTCTAAAACAGCAACAAGAAGAGGAAGAAAGAAAACGATTGCGACGAGAAAAGAAGAAGGAAAAGAAAGAGAAGGCAGTGGAAGAACCCGAAATTGATCCTGATGTTGCGGCCATGATGGGGTTTGGTGGTTTCCGGTCATCAAAGAAATGA | 606 | 0.4604 | MSNTSNNVAGVDNTFRRKFDREEYLERARERERQEEEARSKPKGKGPPVQRKPLKHRDYEVDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLQQVQERFEVLKKRKDLGTFTEQDLDDRVLKQQQEEEERKRLRREKKKEKKEKAVEEPEIDPDVAAMMGFGGFRSSKK | 201 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc60587g00002 | 201 | PANTHER | ZINC FINGER MATRIN-TYPE PROTEIN 2 | 4 | 201 | IPR040107 | GO:0000398|GO:0005681 | |
Stsc60587g00002 | 201 | Pfam | Zinc-finger of C2H2 type | 85 | 109 | - | - | |
Stsc60587g00002 | 201 | MobiDBLite | consensus disorder prediction | 20 | 44 | - | - | |
Stsc60587g00002 | 201 | SUPERFAMILY | beta-beta-alpha zinc fingers | 80 | 122 | IPR036236 | - | |
Stsc60587g00002 | 201 | Coils | Coil | 21 | 41 | - | - | |
Stsc60587g00002 | 201 | Coils | Coil | 148 | 180 | - | - | |
Stsc60587g00002 | 201 | SMART | ZnF_U1_5 | 82 | 116 | IPR003604 | GO:0003676|GO:0008270 | |
Stsc60587g00002 | 201 | MobiDBLite | consensus disorder prediction | 20 | 56 | - | - | |
Stsc60587g00002 | 201 | MobiDBLite | consensus disorder prediction | 156 | 183 | - | - | |
Stsc60587g00002 | 201 | Gene3D | Classic Zinc Finger | 79 | 117 | - | - | |
Stsc60587g00002 | 201 | FunFam | zinc finger matrin-type protein 2-like | 79 | 117 | - | - | |
Stsc60587g00002 | 201 | MobiDBLite | consensus disorder prediction | 156 | 201 | - | - |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc60587g00002 | 4 | 147 | C2H2 Transcription Factor Family | AT3G05760 | 81.944 | 4.50e-85 | 246 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Stsc60587g00002 | zf-C2H2_jaz | 1.8e-06 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc60587g00002 | K12848 | - | gmx:100795833 | 324.324 |