Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60587g00002 ATGTCTAACACCAGCAACAATGTGGCTGGGGTTGACAACACCTTCAGAAGAAAATTCGATCGAGAAGAGTATTTGGAACGAGCTCGGGAGCGTGAGAGGCAGGAGGAGGAGGCTAGATCCAAACCCAAAGGGAAAGGTCCTCCAGTGCAGAGGAAACCCTTAAAACATAGAGATTATGAAGTGGACCTCGAGTCCCGCCTGGGCAAGACTCAAGTTGTTACGCCTGTTGCACCACTGAGTCAGCAGGCTGGATATTACTGCTCTGTTTGTGAGTGTGTGGTAAAGGATTCAGCGAACTACTTAGATCATATTAATGGAAAGAAACATCAAAGAGCTTTGGGCATGTCTATGCGAGTTGAACGTGCCTCTCTACAACAGGTTCAGGAACGATTCGAGGTTCTTAAGAAACGTAAAGATCTTGGCACATTCACTGAGCAAGATCTTGACGACAGGGTTCTAAAACAGCAACAAGAAGAGGAAGAAAGAAAACGATTGCGACGAGAAAAGAAGAAGGAAAAGAAAGAGAAGGCAGTGGAAGAACCCGAAATTGATCCTGATGTTGCGGCCATGATGGGGTTTGGTGGTTTCCGGTCATCAAAGAAATGA 606 0.4604 MSNTSNNVAGVDNTFRRKFDREEYLERARERERQEEEARSKPKGKGPPVQRKPLKHRDYEVDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLQQVQERFEVLKKRKDLGTFTEQDLDDRVLKQQQEEEERKRLRREKKKEKKEKAVEEPEIDPDVAAMMGFGGFRSSKK 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60587g00002 201 PANTHER ZINC FINGER MATRIN-TYPE PROTEIN 2 4 201 IPR040107 GO:0000398|GO:0005681
Stsc60587g00002 201 Pfam Zinc-finger of C2H2 type 85 109 - -
Stsc60587g00002 201 MobiDBLite consensus disorder prediction 20 44 - -
Stsc60587g00002 201 SUPERFAMILY beta-beta-alpha zinc fingers 80 122 IPR036236 -
Stsc60587g00002 201 Coils Coil 21 41 - -
Stsc60587g00002 201 Coils Coil 148 180 - -
Stsc60587g00002 201 SMART ZnF_U1_5 82 116 IPR003604 GO:0003676|GO:0008270
Stsc60587g00002 201 MobiDBLite consensus disorder prediction 20 56 - -
Stsc60587g00002 201 MobiDBLite consensus disorder prediction 156 183 - -
Stsc60587g00002 201 Gene3D Classic Zinc Finger 79 117 - -
Stsc60587g00002 201 FunFam zinc finger matrin-type protein 2-like 79 117 - -
Stsc60587g00002 201 MobiDBLite consensus disorder prediction 156 201 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60587g00002 4 147 C2H2 Transcription Factor Family AT3G05760 81.944 4.50e-85 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc60587g00002 zf-C2H2_jaz 1.8e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60587g00002 K12848 - gmx:100795833 324.324