Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60584g00002 ATGTTAAACATCTCTCTCTCTCTCTTTCTTGATTCAATGGCAAAGAAGCTTGAACATTCTCGGACTGGAATGACAAGAGTACCATCGTCCAACTCAACCTCCATTTACGGCAACGAAGCAGCCACACCAACAACTTCTTTCAAGAAACCAAGAATCGCAGAAGGCTCATCAAACCAGCAAGAATTACTTTCAGCAGGAAAGCTCATGAATTTCTCCACTTTCTTAAGACCTTCAATGCTTCTTGCTAACAATGACAGCAAAGAAAATCGTGAGAATAAAGAGGAACAGTTTTCTGAAAAGCAGTCGAAATCATCGGTTGATCATAACAGTAAAAATAATAAGAGGAAGGTGGTTGATACTACCGGCTTCTGCGACGATCCATTGATGGAATATTCTTCTGTGTGCTCGCTTGGAGCCTCAAACAACACTGACATTATTTCTACCCGGAAACAAGAGGTCGATGATTCTATCTACTTAAGCGAGAATAACGATGAAGATATAGAAGAAGATGCTATGATGAAGGAGATTAAAAATAATGCTAGGCGAGAGGGCAATAATAATGGAGTCAGAAGAAGCAAGAATTCTGAGACTCACAATTTATATGAAAGGCAGCGAAGAGACAAGATCAACAAGAAACTGCGCATACTGAAAGATCTCATACCCAACTGTAATAAGGTGGACAAGGCTTCATTGCTTGATGATGCCATTGAATATCTCAAGGCCCTAAAGCTTCATTTACAGATTATGACAATGGGAACTGGGCTATGCATGGCTCCATTGATGCTACCTACTTCTTCCCCTCATCAGCATTTGATGAACACAACAAGCCAATTACAACATTTAATGGGTTTGAGGAATGGAATTAACATCCCTTTATGCAACATGCCTCACCAGTTTGCTAGTATTCCACCAATTCCACTGCCTCCAGTTGGCATTAGTAACAATAATAATAATGGAGTTGGCATGTTTGGTTTTCCTAACCACTTTTTACCCATGATGACGCCAAATAATCACCCAATGTCTCATCATGCACCTGCTTTCACTACTACTACTATTCATCCCATGCTTGGAAATAATAATATTAATAAGAATAATATTTTTACACAAACACCACTTCAAACAACCAATAGTGATTCAGCTCCATAA 1146 0.3918 MLNISLSLFLDSMAKKLEHSRTGMTRVPSSNSTSIYGNEAATPTTSFKKPRIAEGSSNQQELLSAGKLMNFSTFLRPSMLLANNDSKENRENKEEQFSEKQSKSSVDHNSKNNKRKVVDTTGFCDDPLMEYSSVCSLGASNNTDIISTRKQEVDDSIYLSENNDEDIEEDAMMKEIKNNARREGNNNGVRRSKNSETHNLYERQRRDKINKKLRILKDLIPNCNKVDKASLLDDAIEYLKALKLHLQIMTMGTGLCMAPLMLPTSSPHQHLMNTTSQLQHLMGLRNGINIPLCNMPHQFASIPPIPLPPVGISNNNNNGVGMFGFPNHFLPMMTPNNHPMSHHAPAFTTTTIHPMLGNNNINKNNIFTQTPLQTTNSDSAP 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60584g00002 381 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 193 242 IPR011598 GO:0046983
Stsc60584g00002 381 CDD bHLH_AtPIF_like 193 255 IPR047265 -
Stsc60584g00002 381 PANTHER TRANSCRIPTION FACTOR PIF3 95 351 IPR044273 GO:0003700|GO:0006355
Stsc60584g00002 381 Gene3D - 183 243 IPR036638 GO:0046983
Stsc60584g00002 381 MobiDBLite consensus disorder prediction 178 204 - -
Stsc60584g00002 381 MobiDBLite consensus disorder prediction 21 59 - -
Stsc60584g00002 381 Coils Coil 83 103 - -
Stsc60584g00002 381 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 192 265 IPR036638 GO:0046983
Stsc60584g00002 381 MobiDBLite consensus disorder prediction 23 59 - -
Stsc60584g00002 381 Pfam Helix-loop-helix DNA-binding domain 196 242 IPR011598 GO:0046983
Stsc60584g00002 381 MobiDBLite consensus disorder prediction 86 121 - -
Stsc60584g00002 381 SMART finulus 199 248 IPR011598 GO:0046983
Stsc60584g00002 381 MobiDBLite consensus disorder prediction 83 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60584g00002 Stsc-Chr60584 12669 14920 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60584g00002 32 268 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 35.075 3.41e-31 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc60584g00002 HLH 6.5e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60584g00002 K12126 - gmx:100818543 202.601