Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60582g00007 ATGGGTCGCCATTCTTGTTGTTTAAAGCAAAAACTAAGGAAAGGTTTATGGTCCCCTGAAGAAGATGAGAAGCTCTTCAACCACATTTCTAGATTTGGTGTTGGTTGCTGGAGTTCAGTTCCCAAACAAGCTGGGCTACAAAGATGTGGGAAGAGTTGCAGGTTAAGATGGATAAATTATTTGAGGCCTGATTTGAAGAGAGGCATGTTTTCTCAACAAGAAGAGGATCTTATCATCACTCTTCATCAAGTTCTTGGAAATAGGTGGGCACAGATTGCAGCACAATTACCGGGAAGAACAGATAATGAGATAAAGAATTTATGGAATTCAAGTCTGAAGAAGAAGCTAATGAAGCAAGGCATTGATCCAACTACACACAAGCCTCTTCTTAATAATCATCATCATCAACTTCCCAAAGAAGAAGACAAAGATATTAATGATATCACCATGGAAATTATTAATGATAACAATAATAATTATTATACTAATAATTATAATTCAACAGAAGCATCTTCTTCTTCTTCTTCCATGGCATTGTTAATGATGAGTACTACTGATCAGTGCAACAGTAATAGTAATTACTATGATGGATCATCATCATCATTAGCAGCAATGTTAGATCCATTGTCATACTTTGATTCTGGATTATTCTCTTGTGATGATCATAACAACATGAACATGAATAACATTATTAATAATAATAATAATAATAATAATGAAGAGGAGGAGAACAAGTTAGATTCTTTGGTTCATCAGTTTCATCATCAACAACTAGTCAATGCCATCAAATGTGAAGAGGATTTCAATACAAATTATTCATCATGGCAGAATAATAATTACAATAATCTGCAGCACCAGAATTCAATGCAAGATTTCAGCAGCTATAGCTATAATAATTTAAGGTCACTCTCATCATCAGAAGATCTATCAGCAGCAGCATCAGCAGAAGTAGCAGCAGCAGGACCAAATTTTGATGCATTCCACCAGATATGA 993 0.3474 MGRHSCCLKQKLRKGLWSPEEDEKLFNHISRFGVGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGMFSQQEEDLIITLHQVLGNRWAQIAAQLPGRTDNEIKNLWNSSLKKKLMKQGIDPTTHKPLLNNHHHQLPKEEDKDINDITMEIINDNNNNYYTNNYNSTEASSSSSSMALLMMSTTDQCNSNSNYYDGSSSSLAAMLDPLSYFDSGLFSCDDHNNMNMNNIINNNNNNNNEEEENKLDSLVHQFHHQQLVNAIKCEEDFNTNYSSWQNNNYNNLQHQNSMQDFSSYSYNNLRSLSSSEDLSAAASAEVAAAGPNFDAFHQI 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60582g00007 330 PANTHER MYB DOMAIN PROTEIN 55 1 292 - -
Stsc60582g00007 330 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Stsc60582g00007 330 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Stsc60582g00007 330 SMART sant 13 63 IPR001005 -
Stsc60582g00007 330 SMART sant 66 114 IPR001005 -
Stsc60582g00007 330 FunFam MYB transcription factor 68 129 - -
Stsc60582g00007 330 FunFam MYB transcription factor 11 67 - -
Stsc60582g00007 330 CDD SANT 70 112 IPR001005 -
Stsc60582g00007 330 CDD SANT 17 61 IPR001005 -
Stsc60582g00007 330 Coils Coil 224 252 - -
Stsc60582g00007 330 Gene3D - 68 146 - -
Stsc60582g00007 330 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Stsc60582g00007 330 Gene3D - 11 67 - -
Stsc60582g00007 330 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Stsc60582g00007 330 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Stsc60582g00007 330 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Stsc60582g00007 330 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60582g00007 Stsc-Chr60582 44674 46406 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60582g00007 1 129 MYB Transcription Factor Family AT4G01680 84.496 1.51e-79 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc60582g00007 Myb_DNA-binding 3.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60582g00007 K09422 - cpap:110810129 266.159