LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc60581g00018	ATGATTAAACACATGAACTCACTGCCTCTACCACCATTTCTTCTATCAGTTGCTGTTCTTTTCAGCTCAATATCTGCCACAGATTTTGTCTTCAATGGCTTCAACTCCTCTGATTTGTTGCTCTATGGGAATGCAACCATTGACTCAAGAATCCTAACCCTCACACATCACCAAACTTTCTCAGTTGGTCGTGCACTTTACCATCACAAGATTCAAACCAAGAACTCAAACTCTTCTTCCTATGTCTACCCTTTTTCCACTTCCTTCATATTCTCCATAGCACCTTTTAAGGATACTCTCCCTGGCCATGGATTTGTCTTCATCTTCACACCAGTCACTGGCATATTCCATGGAACAAGCACTGCTGCTCAGAATCTGGGGCTCTTCAACTTCACCAACAATGGAAATTCAAGCAACCATGTGTTTGGTGTTGAGTTTGATGTGTTTAAGAACCAGGAGTTTAATGACATAAGTGCCAACCATGTTGGGATTGACATAAACTCTCTCACCTCTTTTGCATCTCATGATGCAGGTTATTGGCCAGATGATGAAGATCATGATTCTTTCAAGGATTTGAAGCTCAACAATGGTGAGAATTACCAAGTTTGGATTGACTATGAGGATTCTTTGCTCAATGTTACCATGGCAAAGGTTGGTATGAAAAGGCCTATGAAACCTTTGTTGAATGTTTCTCTTAACTTGTCTCGGGTTTTTCTAGATGAGATGTTTGTTGGATTTACCAGTGCCACAGGGCAATTAGTTGAGAGTCACAAGATTCTTGCTTGGAGTTTTAGCAACACTAATTTCTCATTAAGTGAAGAGCTTATTACTACTGGTTTACCCTCTTTTGTTCTTCCAAAGGATTCAATTTTCAAGTCAAAGGGGTTTGTTGCAGGGTTCACAGTAGGTATCTTCTTTGTTGTTTGTGTCTTTGTTTTGCTTGCAATGTTTGTGATTCGGTTAAAAAGAAGGCTTGAAAGGAAGAGAAAGGAAATGGAAGATTGGGAGTTAGAGTATTGGCCACACAGAATGACATATGAAGAAATTGATGCAGCAACAAAGGGATTTGATGAGGAAAATGTGATTGGAGTTGGTGGCAATGGTAAGGTCTACAAGGGTGTCCTAAGAGGCGGCGGCACAGAGGTGGCCGTGAAGCGAATATCACAAGAAAACAACGGCGTGCGAGAGTTTCTAGCCGAAATTTCAAGCCTTGGAAGATTGAAGCATAAGAACTTGGTTGGTTTGAGAGGATGGTGCAAGAAAGACATGGGAAGTTTCTTGTTAGTTTATGAATACATGGAAAATGGGAGTTTGGATAAGAGAGTGTTTTGTGATGAGAGCAAGATGCTGAACTGTGAAGAGAGAATCAGAATCATCAGAGATGTGGCTTTTGCAGTGTTGTATTTGCATGAAGGTTGGGAAGAAAAGGTTCTGCATAGGGACATCAAAGCCAGCAATGTGTTACTTGATAAAGACATGAATGCAAAGCTTGGAGACTTTGGATTAGCAAGAACTCATAGCCATGGCCATGTTGCTAGCACTACAAAACTAGTTGGAACTGTTGGTTACATGGCTCCGGAAGTGATCAAGACTGGACAGGCCTCGACTCGCACCGATGTGTACATGTTTGGAATCATGATTTTAGAGGTCATGTGTGGAAGAAGGCCTATGGAAGAAGGTAAGCCACCTCTTGTGGAGTTTGTGTGGGGACTAATGGTAAAAGGGGAACTAATGAATGCAGTTGATGAGAGGTTAAGGGCTAAAGGAGAGTTCAATGTGCAAGAAGTTGAGAAGGTTCTTCAGCTGGGATTGTTGTGTGCATACCCTGAACCAAAATCAAGACCAAAAATGAGACAAGTTGTGAGTATTTTAGAAGGGAAGAACAATGAGGGAGGTGAAGAAGAATCAGAGAATGAGAATATGGACACTAGTTTGCTTCTAAGGTTGAAATCTGGGGATATTTTGTCTGAGTATTCAAAGTATTTTAACTATTCAACACATCCAACATTTGAAGATATTCGCCAGTCTAATACTTCCTCAACATCTCTCACTTGGTCCAAATCTTTAGTTGCAGTGTTATCATGCATAACCTAG	2094	0.4088	MIKHMNSLPLPPFLLSVAVLFSSISATDFVFNGFNSSDLLLYGNATIDSRILTLTHHQTFSVGRALYHHKIQTKNSNSSSYVYPFSTSFIFSIAPFKDTLPGHGFVFIFTPVTGIFHGTSTAAQNLGLFNFTNNGNSSNHVFGVEFDVFKNQEFNDISANHVGIDINSLTSFASHDAGYWPDDEDHDSFKDLKLNNGENYQVWIDYEDSLLNVTMAKVGMKRPMKPLLNVSLNLSRVFLDEMFVGFTSATGQLVESHKILAWSFSNTNFSLSEELITTGLPSFVLPKDSIFKSKGFVAGFTVGIFFVVCVFVLLAMFVIRLKRRLERKRKEMEDWELEYWPHRMTYEEIDAATKGFDEENVIGVGGNGKVYKGVLRGGGTEVAVKRISQENNGVREFLAEISSLGRLKHKNLVGLRGWCKKDMGSFLLVYEYMENGSLDKRVFCDESKMLNCEERIRIIRDVAFAVLYLHEGWEEKVLHRDIKASNVLLDKDMNAKLGDFGLARTHSHGHVASTTKLVGTVGYMAPEVIKTGQASTRTDVYMFGIMILEVMCGRRPMEEGKPPLVEFVWGLMVKGELMNAVDERLRAKGEFNVQEVEKVLQLGLLCAYPEPKSRPKMRQVVSILEGKNNEGGEEESENENMDTSLLLRLKSGDILSEYSKYFNYSTHPTFEDIRQSNTSSTSLTWSKSLVAVLSCIT	697

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc60581g00018	697	Pfam	Protein kinase domain	357	621	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc60581g00018	697	PANTHER	-	44	628	-	-
	Stsc60581g00018	697	Gene3D	Transferase(Phosphotransferase) domain 1	433	650	-	-
	Stsc60581g00018	697	ProSitePatterns	Protein kinases ATP-binding region signature.	362	385	IPR017441	GO:0005524
	Stsc60581g00018	697	CDD	STKc_IRAK	362	626	-	-
	Stsc60581g00018	697	FunFam	L-type lectin-domain containing receptor kinase S.4	433	638	-	-
	Stsc60581g00018	697	ProSiteProfiles	Protein kinase domain profile.	356	624	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc60581g00018	697	Gene3D	-	25	278	-	-
	Stsc60581g00018	697	SMART	serkin_6	356	623	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc60581g00018	697	FunFam	Putative L-type lectin-domain containing receptor kinase VII.2	318	432	-	-
	Stsc60581g00018	697	SUPERFAMILY	Protein kinase-like (PK-like)	331	625	IPR011009	-
	Stsc60581g00018	697	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	477	489	IPR008271	GO:0004672\|GO:0006468
	Stsc60581g00018	697	Coils	Coil	318	338	-	-
	Stsc60581g00018	697	Gene3D	Phosphorylase Kinase; domain 1	318	432	-	-
	Stsc60581g00018	697	CDD	lectin_legume_LecRK_Arcelin_ConA	27	267	IPR001220	GO:0030246
	Stsc60581g00018	697	FunFam	L-type lectin-domain containing receptor kinase S.4	25	272	-	-
	Stsc60581g00018	697	SUPERFAMILY	Concanavalin A-like lectins/glucanases	25	271	IPR013320	-
	Stsc60581g00018	697	Pfam	Legume lectin domain	27	269	IPR001220	GO:0030246

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc60581g00018	Stsc-Chr60581	62244	64586	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc60581g00018	24	572	Receptor kinase-like Gene Family	AT4G04960	66.787	0.0	724

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Stsc60581g00018		Pkinase	1e-47	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc60581g00018	-		-	gmx:100804391	1046.19