Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60581g00012 ATGGAGATCAACAAAAACAACAACCCTGCTGGTTCTAATTCTTCCACCAAAACTGAGAGGAAATTCGTTGAGAGAAATAGAAGAAACCAAATGAAGGCACTCTACTGCAAGCTCAATTCTCTTCTCCCTCGTCAAGCCTCAAGGGAAGGGATTTGTTCACTGCCGGATCAGCTAGAGGAAGCCACAAACTACATAAAGAAGTTACAGGTGAAGGTGGAGAAAATGAAGGAAAAGAAGAACGCGTTACTTATTGGAAGGGTTCATCAAACGCCAAATATTATTAATAGAAACGGTAGCAGTGGTGGTCTAATTAGATCCCCAGAAATTGAGATCCAACAAATGGGATCCACATTAATGGTTGTTCTTATAACTGGATTGGATTGTCATTTCATGTTCAATGAGGCCATTCGTATTCTTCATGAAGAAGGTGCAGATGTTGTTAGCGCCACTTACAAGGTTGTTCATCAACATGCTGTTTTCCATACAATGCACTGCCAGCAGGTAAATGAGTATGCGAATGGAGTTGGGGCAAGGATATCAGAGAGACTGAAGAAGTTTGTGAATGATTCTAGGCGTCTGCATGCTATCATATACATGTCGAAGATACGAAGCTCCAGCATATCAGTTATATTATGGAAAGATTATCCGGTAGGTAAAAATCGCGGCGTACTGGAGTCCAAGAGAGGCGAGGCCCAAGAAGAAGAGATTAGTAGGAAAGGCGGCACATTCCTGAATCCAGATTTTAGGGTTTTTGGAGTCATCATCGTCTGCCTATTCTGA 780 0.4205 MEINKNNNPAGSNSSTKTERKFVERNRRNQMKALYCKLNSLLPRQASREGICSLPDQLEEATNYIKKLQVKVEKMKEKKNALLIGRVHQTPNIINRNGSSGGLIRSPEIEIQQMGSTLMVVLITGLDCHFMFNEAIRILHEEGADVVSATYKVVHQHAVFHTMHCQQVNEYANGVGARISERLKKFVNDSRRLHAIIYMSKIRSSSISVILWKDYPVGKNRGVLESKRGEAQEEEISRKGGTFLNPDFRVFGVIIVCLF 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60581g00012 259 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 15 91 IPR036638 GO:0046983
Stsc60581g00012 259 Pfam Helix-loop-helix DNA-binding domain 18 69 IPR011598 GO:0046983
Stsc60581g00012 259 MobiDBLite consensus disorder prediction 1 20 - -
Stsc60581g00012 259 MobiDBLite consensus disorder prediction 1 17 - -
Stsc60581g00012 259 Gene3D - 8 90 IPR036638 GO:0046983
Stsc60581g00012 259 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 15 68 IPR011598 GO:0046983
Stsc60581g00012 259 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 12 187 - -
Stsc60581g00012 259 Coils Coil 58 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60581g00012 Stsc-Chr60581 42520 44608 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60581g00012 9 188 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 46.277 4.61e-42 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc60581g00012 HLH 1.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60581g00012 - - gmx:100784418 210.305