Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60581g00005 ATGGATTTCAATTGGGACGCTGATCAGATATTTCGACTGTATTTGCATGATTATATGATGAAAAGAGGAATGCACAAAACCGCTGAGATTTTCAGGAAGGAAGGCGATCTTGCTGACACTTCCGTTGCGCTTGATTCTCCTGAGGGGTTCATGCACGAATGGTGGTCTATTTTCTATGATGTATATATGTCTAGGACTAAGCTAGCGAAGGATCAGAGGACTGAGGCAGAATCTTCTGGCAAGGCCCCAGCGGGAACTACATGTAATGCCGGAATTTGTGTCCCTCCAATCCCTCGATCATCAATGAATGAGCAGAGACCTGAACAATGTCATGTCAACTCCAGCTTTAACAGGATGATGGCACAACCGGCTGCATGTGTACTACCATCAACACTCAATGCCAAAGAGCATCCTGGATATCCTGTAGATGCCGCCAGAGCAAACAATTTCAAGTTATTGGCTGTGACTAATTCAAATAATCCTCTCCAAGATGTAGGGAATAATGCCCAAAGGGAAGTTTCTAAGAACCAAGCATTAACCTCATTTTCGGGAGCACCAAACTATCAACAGCAATTTCGAGCGCAGACATCGCAAAATCAGGAAGCAGTCCTTGCTCATATACCTGCATTTAGTCCTAAAAGTCAGACTTTCCCAGTTCCTCGAAACTCTGTTGAGTGCAACAATCATCACACAAAGATTTCCGAGACTGAATTAAACAAAATGGATAATAGGCAGATGATGGGCTCAATGATTAGGGATCAGCAACCACAGATGCAGTCTCAGAATGTTGAGAAGAGCAAAAAGAGAAAGGCAATGACGCCCTTGAGGCCTGGAGAAAGTGCCATGGATCATGTAGATGCAGAAGATGGAAAACCAATGGAAGAAAGTGTTGAATCTTTCCTTTCATTTGAAAATGAACATGCTGATCATAGAGTTGTGCCTTTCAGCAATCTGGCTCGTATTTCAGCTGCACATAGTAAAAATGAAAATAAAGGTTTTTCATTTGAAGAAGTCAGTTGCCTTCACTCAAGCAAAAACAAGGTTTTATCCACCCATTTTTCATGGGATGGAAAGGTTTTGGCTAGTGCTGGGCATGAGAAGAAGGTTTTCATTTGGAACATGGAAACCCTTAATTGTGTTACTACTACAGAAGGGCATTCACATCTCATTACAGATGTTCGGTTTAGACCAGGTTCTACTATATTTGCAACATCTTCCTTTGATCAATCTATAAAACTCTGGGATGCAGCAAGGCCCAACAATTCACTGTTCCAACTCATTGGACATGCCGACCAAGTAATGTCATTGGACTTCCATCCAAGGAAGGCTAACATTCTTTGTTCATGTGATAGCAATGACGTAATTCGTCTATGGGATATCAACCAGCGTACCTGCTTGCATACTACTAAGGGAGGCGCTAGTAAACAAGTCAGGTTCCAGCCTTCTATTGGGAAGCTTCTGGCTACTGTGTCAGGAAATAATATCAAGATAGTTGATTTTGAGAGCAATAGATTTCTGTACCAACTGAAGGGCCATGTCAAAGATGTTCTTTCCATTTGTTGGGACATGAGTGGAAACTATGTTGCCTCCATCAGTGAAGATTGCGCACGTGTCTGGTCTGCTGCAGATGGAAAATGTATAAGCGAATTGCATTCAAATTCAACTGGGAACAAGTTTCAATCGTGCGTATTTCATCCAGGATATCTTAATCTCTTAGTAATTGGTGGCTATCAGTCCCTCGAATTGTGGTGTACAACAGAAAACAGCAAAACACTGACAGTTCCTGCACACAAGGGATTAATTGCTGGACTAGCACATTCATCGCAAGATGAAATGATTGCCTCAGCTAGCCATGATCATTGCGTGAAACTCTGGAAATAA 1881 0.4216 MDFNWDADQIFRLYLHDYMMKRGMHKTAEIFRKEGDLADTSVALDSPEGFMHEWWSIFYDVYMSRTKLAKDQRTEAESSGKAPAGTTCNAGICVPPIPRSSMNEQRPEQCHVNSSFNRMMAQPAACVLPSTLNAKEHPGYPVDAARANNFKLLAVTNSNNPLQDVGNNAQREVSKNQALTSFSGAPNYQQQFRAQTSQNQEAVLAHIPAFSPKSQTFPVPRNSVECNNHHTKISETELNKMDNRQMMGSMIRDQQPQMQSQNVEKSKKRKAMTPLRPGESAMDHVDAEDGKPMEESVESFLSFENEHADHRVVPFSNLARISAAHSKNENKGFSFEEVSCLHSSKNKVLSTHFSWDGKVLASAGHEKKVFIWNMETLNCVTTTEGHSHLITDVRFRPGSTIFATSSFDQSIKLWDAARPNNSLFQLIGHADQVMSLDFHPRKANILCSCDSNDVIRLWDINQRTCLHTTKGGASKQVRFQPSIGKLLATVSGNNIKIVDFESNRFLYQLKGHVKDVLSICWDMSGNYVASISEDCARVWSAADGKCISELHSNSTGNKFQSCVFHPGYLNLLVIGGYQSLELWCTTENSKTLTVPAHKGLIAGLAHSSQDEMIASASHDHCVKLWK 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60581g00005 626 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 594 626 - -
Stsc60581g00005 626 Gene3D - 224 478 IPR015943 GO:0005515
Stsc60581g00005 626 SMART WD40_4 585 626 IPR001680 GO:0005515
Stsc60581g00005 626 SMART WD40_4 376 415 IPR001680 GO:0005515
Stsc60581g00005 626 SMART WD40_4 334 373 IPR001680 GO:0005515
Stsc60581g00005 626 SMART WD40_4 462 499 IPR001680 GO:0005515
Stsc60581g00005 626 SMART WD40_4 419 459 IPR001680 GO:0005515
Stsc60581g00005 626 SMART WD40_4 502 540 IPR001680 GO:0005515
Stsc60581g00005 626 SMART WD40_4 543 584 IPR001680 GO:0005515
Stsc60581g00005 626 Gene3D - 479 626 IPR015943 GO:0005515
Stsc60581g00005 626 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 426 461 - -
Stsc60581g00005 626 MobiDBLite consensus disorder prediction 252 287 - -
Stsc60581g00005 626 ProSiteProfiles LIS1 homology (LisH) motif profile. 14 39 IPR006594 GO:0005515
Stsc60581g00005 626 ProSiteProfiles Trp-Asp (WD) repeats profile. 383 415 IPR001680 GO:0005515
Stsc60581g00005 626 ProSitePatterns Trp-Asp (WD) repeats signature. 446 460 IPR019775 -
Stsc60581g00005 626 Pfam WD domain, G-beta repeat 378 415 IPR001680 GO:0005515
Stsc60581g00005 626 Pfam WD domain, G-beta repeat 592 626 IPR001680 GO:0005515
Stsc60581g00005 626 Pfam WD domain, G-beta repeat 506 539 IPR001680 GO:0005515
Stsc60581g00005 626 Pfam WD domain, G-beta repeat 423 459 IPR001680 GO:0005515
Stsc60581g00005 626 SUPERFAMILY WD40 repeat-like 335 626 IPR036322 GO:0005515
Stsc60581g00005 626 ProSiteProfiles Trp-Asp (WD) repeats profile. 594 626 IPR001680 GO:0005515
Stsc60581g00005 626 CDD WD40 343 626 - -
Stsc60581g00005 626 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 383 415 - -
Stsc60581g00005 626 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 626 IPR044716 GO:0003714
Stsc60581g00005 626 Pfam LisH 16 35 IPR006594 GO:0005515
Stsc60581g00005 626 ProSiteProfiles Trp-Asp (WD) repeats profile. 341 382 IPR001680 GO:0005515
Stsc60581g00005 626 ProSiteProfiles Trp-Asp (WD) repeats profile. 426 468 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60581g00005 Stsc-Chr60581 10448 15644 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60581g00005 358 625 Miscellaneous Gene Families AT5G08390 23.551 5.96e-17 83.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Stsc60581g00005 WD40 0.014 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60581g00005 - - gmx:100783354 738.413