Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc60581g00004 | ATGGCTTCTCTCACTTCTTCCCTGTCCTCTCTCTCCCTCCACTCTCATACATCTTCCGCTGCTGCTTCTTCACGTTTCTCTCTCCTGCCCGCTTCCAAATTCACCTTCTCCCTCGCTGCCGCACGCCCCCGCGCACTCATCCTCGCCGCCGCAAAATGCAAACCCTCCGATGACATCGACACCTCGTTCTTCGACAACGTGAACCCAGAAGAGGAGGTCCCCTTCAACCCGCCAGAGCCCCCGGAAGGGTTCGTGGCCCCACCATCGTTCGACGAAGGGCCAATGGAAAGCGAAGACGAAATAGCGGCCGCATACGAAGAGTTGTACGGACCGGCGTACAGCGGGGTGAGCGTTCTTGGAAATGACATATACGTGATGGACTCGAAGATTAAGAGGGATACTGGGTTCGGGTCGAAGGCGAAGAAGGAGAAGGTGAAGGATGGGTTCGAGGAGAGGGTGGTGCAGGTGAGGAGGGTGACCAAGGTGGTTAAGGGAGGGAAGCAGCTGAGGTTCAGGGCGGTGGTGGTGGTCGGAGACAAGAAGGGGAATGTGGGTGTCGGAGTTGGAAAGGCCAAAGAGGTAATTGCAGCTGTTCAGAAGTCTGCTGTTAATGCAAGGAGGAACATCATCACTGTTCCTTTGACTAAGTACTTGACTTTCCCACACAGAGCTGATGGAGATTATGGAGCAGCCAAGGTGATGCTGAGGCCTGCATCTCCAGGAACTGGAGTGATTGCTGGTGGGGCGGTCAGGATTGTTCTCGAGATGGCCGGAGTTGAGAATGCTCTCGGAAAGCAACTCGGCAGCAACAATGCGCTCAACAATGCCAGGGCAACTGTTACTGCTGTTCTCAAAATGAAGCAGTTCCGTGAGGTTGCTGAAGAGCGTGGCATCCCAATGGAAGAACTATGGAAATGA | 918 | 0.5458 | MASLTSSLSSLSLHSHTSSAAASSRFSLLPASKFTFSLAAARPRALILAAAKCKPSDDIDTSFFDNVNPEEEVPFNPPEPPEGFVAPPSFDEGPMESEDEIAAAYEELYGPAYSGVSVLGNDIYVMDSKIKRDTGFGSKAKKEKVKDGFEERVVQVRRVTKVVKGGKQLRFRAVVVVGDKKGNVGVGVGKAKEVIAAVQKSAVNARRNIITVPLTKYLTFPHRADGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVTAVLKMKQFREVAEERGIPMEELWK | 305 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc60581g00004 | 305 | PANTHER | RIBOSOMAL S SUBUNIT | 138 | 304 | IPR000851 | GO:0003723|GO:0003735|GO:0005840|GO:0006412 | |
Stsc60581g00004 | 305 | Pfam | Ribosomal protein S5, C-terminal domain | 226 | 296 | IPR005324 | GO:0003735|GO:0005840|GO:0006412 | |
Stsc60581g00004 | 305 | SUPERFAMILY | dsRNA-binding domain-like | 146 | 214 | - | - | |
Stsc60581g00004 | 305 | SUPERFAMILY | Ribosomal protein S5 domain 2-like | 219 | 297 | IPR020568 | - | |
Stsc60581g00004 | 305 | Gene3D | - | 216 | 304 | IPR014721 | - | |
Stsc60581g00004 | 305 | ProSiteProfiles | S5 double stranded RNA-binding domain profile. | 149 | 212 | IPR013810 | GO:0003723|GO:0003735|GO:0005840|GO:0006412 | |
Stsc60581g00004 | 305 | Hamap | 30S ribosomal protein S5 [rpsE]. | 126 | 302 | IPR005712 | GO:0003735|GO:0006412|GO:0015935 | |
Stsc60581g00004 | 305 | Pfam | Ribosomal protein S5, N-terminal domain | 149 | 213 | IPR013810 | GO:0003723|GO:0003735|GO:0005840|GO:0006412 | |
Stsc60581g00004 | 305 | FunFam | 30S ribosomal protein S5 | 138 | 210 | - | - | |
Stsc60581g00004 | 305 | NCBIfam | 30S ribosomal protein S5 | 147 | 302 | IPR005712 | GO:0003735|GO:0006412|GO:0015935 | |
Stsc60581g00004 | 305 | Gene3D | - | 139 | 210 | - | - | |
Stsc60581g00004 | 305 | ProSitePatterns | Ribosomal protein S5 signature. | 166 | 198 | IPR018192 | - | |
Stsc60581g00004 | 305 | FunFam | 30S ribosomal protein S5 | 214 | 305 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc60581g00004 | Stsc-Chr60581 | 8939 | 10282 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc60581g00004 | 149 | 305 | Cytoplasmic Ribosomal Protein Gene Family | AT2G41840 | 29.697 | 6.69e-16 | 74.7 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc60581g00004 | K02988 | - | gmx:100787105 | 406.371 |