Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60581g00001 ATGGAACAAGAAGGAGCAGCCTCAGACATGAACAATAAGAAGAAGAAACAATTAGTAGCAGTGCAGTGTCCAAGGTGTGATTCAATGAACACCAAATTCTGTTACTACAACAACTACAGCTTGTCGCAGCCTCGTTACTTCTGCAAGGCTTGCAGAAGGTACTGGACGCATGGCGGAGCCTTGAGGAACGTTCCAGTTGGTGGCGGTTCTCGCAAGCCCAAGCGTCCAAAGCTTAATTATTCTTCTGAGATCAACCGCTCTCCTATGGCGGGGGTTCCTCCTCCTCCTCCTTCTGTTATTCCATCTTCTGTGCCTTCATTTTTGCAGGGTGTTGGTGGATTTATGTCTTCTTCTTCTCCTCTTGGAGGGATTCATGGTTATTCAAATCATGATGCTGTTGTTGGTGTCGGTGTTGGTGTTGGTGGTTCTAATAATAATAATTTGGGTGTTGTTTCTGGTTTTAATAATGTGGTGGGTTCTCAAACTGAGTCTCAGTTCTATCATCAAATGATGATGATGAATCACATGAATAATAATAATAATAATAATAGGGGCACACTACTTAACCCTGAACAAGATGGATCTGTGTGGAGGACCATGATCACCACCACCACCACCACCACTCAAAGGAACAATAACGATTCTATTGCTGCTTCTTCTGCTGCTGGTTCTTCTTCATCTGCTGCTGCTGCTTTCATGCTGAATCAATGGCCTAGTAGTGTCACAGG 728 0.4409 MEQEGAASDMNNKKKKQLVAVQCPRCDSMNTKFCYYNNYSLSQPRYFCKACRRYWTHGGALRNVPVGGGSRKPKRPKLNYSSEINRSPMAGVPPPPPSVIPSSVPSFLQGVGGFMSSSSPLGGIHGYSNHDAVVGVGVGVGGSNNNNLGVVSGFNNVVGSQTESQFYHQMMMMNHMNNNNNNNRGTLLNPEQDGSVWRTMITTTTTTTQRNNNDSIAASSAAGSSSSAAAAFMLNQWPSSVTG 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60581g00001 243 Pfam Dof domain, zinc finger 21 75 IPR003851 GO:0003677|GO:0006355
Stsc60581g00001 243 ProSitePatterns Zinc finger Dof-type signature. 23 59 IPR003851 GO:0003677|GO:0006355
Stsc60581g00001 243 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 12 200 IPR045174 GO:0003700|GO:0006355
Stsc60581g00001 243 ProSiteProfiles Zinc finger Dof-type profile. 21 75 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60581g00001 Stsc-Chr60581 2425 3152 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60581g00001 23 82 C2C2-Dof Transcription Factor Family AT4G21050 81.667 1.52e-32 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Stsc60581g00001 zf-Dof 7.2e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60581g00001 - - aip:107621958 195.282