Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60580g00016 ATGTCTCTCCCACAAACCCTACTTCCTCTCCTCCTTTCCCTCATCATCACCCTCGTTACCGCCGATGACTCCGCCGTCATGTCCAATTTCCTCAAAACCCTCACTTCCCCGCCCTCCGACTGGTCCTCCAAAACCCTCTACTGCCAATGGACCGGCATCACCTGCGACTCCTCCAACCGCGTCACCGCCATAAAACTCTCCTCCAAGTCCCTCACCGGCACTCTCCCCTCCGATCTCAACTCCCTCTCTCAGCTCACTGACCTCTACCTCCAAGAAAACTCCCTCTCCGGCCCACTCCCTTCCCTCTCCAACCTCGCCAACCTCCAAACCGCGTATCTCGGCACCAACAACTTCACCTCCGTCCCCTCCGCCGCATTCTCCGGCCTCACCAGCATCCAGAAACTTAGCCTCTTCAACAACCCTTCCCTCTCCCCCTGGCCCTTCCCCACCGACTTAACCAACTCATCAACCCTCAGCGATCTCGATTTCGGTTCCGCCGGAATCACCGGCGAACTTCCGGACATCTTCGACTCCTTCCCCGGTCTCCAGAACCTTCGCCTCTCCTACAACAACCTCACCGGATCCTTGCCAAAGTCCCTCGCTTCCTCTTCCATTACCAACCTGTGGCTTAACAACCAGCAAAACGGTTTATCGGGGACAATTGAAGTTCTCTCCAACATGACGCAGTTGTCTCAGTTGTGGCTTCACAAGAACCAGTTCACCGGTGGGATCCCCGATTTGTCGAAATGCGATAGCCTCTTTGATTTGCAACTAAGGGATAACCAGCTAACCGGGGTCGTTCCGAGCTCATTGATGGCGCTTCCAAGCTTGAAGAACGTATCTCTGGACAACAATGAGTTGCAGGGTCCTGTGCCGGTGTTCCTTAAGGGTGTGCAGGTTACACTTCATGGGATCAATAGTTTTTGTAGGGATACTCCTGGACCTTGTGATGATAGGGTCATGGTTTTGCTTAAGGTTGCCGAGGGTTTTGGGTACCCGAGTCGGTTTGCGGAATCCTGGAAAGGGAATGATCCTTGCAGTGGTTGGAGTTTTGTGGTTTGTTCAGATGGCAAGATTACTACTTTGAATTTTAAGAATCTGGGTTTGCAGGGGATTATTTCACCTGCATTTGCCAATTTGACTGATTTGAGGAGCTTGTACCTCAGTGGGAACCATTTGACTGGTTCTATACCCGAGAGCTTGACCACATTGCCTCAACTCGAGACTCTTGATGTGTCTAATAACAATTTGTTTGGACAGGTTCCGAAATTTCCTCCGAGGGTGAAGTTATTTACTTCTGGCAATGCTATGCTTGGGAAGAATCCTGGTCCTGGGGGAGGTGGAGGAGGGAGTGGAACTAGTCCTTCTGTGGGGTCTGGTCCAAGTGGAAGTCCAGTTGAACAGAGGAAAGGCAGTTCCTTGCTGCCGGGTTGGATTGTTGGTATAGTGGTTTTTGTTTTACTTTTTGTTTTTGTGGTGGTGTTTGTATCCTGGAAGTGTTATGTCAGAAATCGGCACCGGAAGTTCGGAAGGGTTGGTGTTCCCGAGAATGGAAAAGGAAACTTTAAACTGGATGCGGCGAGTGTTTCCAATTCCAATGGATATGGTGGTGTGCCTAGTGAATTGCAAAGCCAGAGCAGTGGTGATAGGAGTGATCTTAATGGTTTTGATGGTGGAAGTGCCACAATTTCAATCCATGTTCTTCGGCAAGTAACCAATAATTTCAGTGAAGAGAACATTTTGGGTAGAGGAGGATTTGGTGTTGTTTATAAAGGCGAGTTGCCTGATGGAACAAAAATTGCTGTCAAGAGGATGGAATCTGTGGCAATGGGAAACAAAGGAATGAATGAGTTCCAAGCTGAGATAGCAGTTCTTAGTAAAGTTAGGCATAGACATCTCGTCGCTCTTCTGGGATATTGCATCAATGGCAATGAGAGGATTTTGGTATATGAGTATATGCCTCAAGGAACACTAACTCAGCATCTATTTGAATGGCGTGAACTTGGATGTGCTTCCTTGACATGGAAACAAAGGGTAGCAATAGCTTTGGATGTAGCAAGGGGAGTAGAATACTTGCATAGCTTAGCACAGCAAAGCTTCATTCACAGAGATTTAAAACCCTCAAACATACTATTAGGTGATGACATGAGGGCAAAGGTTGCAGATTTTGGATTGGTTCGGCTTGCACCAGATGGGAAGTATTCTGTCGAGACTCGGCTGGCTGGAACATTTGGGTATCTTGCTCCCGAGTATGCAGCTACCGGAAGAGTGACAACCAAAGTGGATGTTTATGCATTTGGAGTAGTTTTGATGGAACTTATCACCGGTAGAAGGGCATTGGATGATACTTTGCCTGATGAAAGGTCTCACTTGGTTACATGGTTCCGTAGGGTACTTATTAACAAGGAAAACATCCCAAAGGCAATTGATCAAACTCTCGAACCGGATGAGGAAACCATGGAAAGCATATATAAAGTGGCCGAGCTGGCAGGCCATTGCACAGCTCGTGAACCATACCAAAGGCCAGATATGGGGCATGCAGTGAATGTTTTGGTTCCACTCGTGGAGCAATGGAAACCAACAAGGAATGCAGAAGAAGACAATGGTGGCATTGACCTTCAGATGAGTCTTCCTCAAGCTCTGCAAAGATGGCAAGCCAATGAAGGCACTTCAACAATGTTTGATATGTCATACTCACAAACCCAATCAAGCATTCCCTCTAAACCTGCTGGCTTTGCAGATTCCTTCGATTCAATGGATTGCCGGTGA 2769 0.4807 MSLPQTLLPLLLSLIITLVTADDSAVMSNFLKTLTSPPSDWSSKTLYCQWTGITCDSSNRVTAIKLSSKSLTGTLPSDLNSLSQLTDLYLQENSLSGPLPSLSNLANLQTAYLGTNNFTSVPSAAFSGLTSIQKLSLFNNPSLSPWPFPTDLTNSSTLSDLDFGSAGITGELPDIFDSFPGLQNLRLSYNNLTGSLPKSLASSSITNLWLNNQQNGLSGTIEVLSNMTQLSQLWLHKNQFTGGIPDLSKCDSLFDLQLRDNQLTGVVPSSLMALPSLKNVSLDNNELQGPVPVFLKGVQVTLHGINSFCRDTPGPCDDRVMVLLKVAEGFGYPSRFAESWKGNDPCSGWSFVVCSDGKITTLNFKNLGLQGIISPAFANLTDLRSLYLSGNHLTGSIPESLTTLPQLETLDVSNNNLFGQVPKFPPRVKLFTSGNAMLGKNPGPGGGGGGSGTSPSVGSGPSGSPVEQRKGSSLLPGWIVGIVVFVLLFVFVVVFVSWKCYVRNRHRKFGRVGVPENGKGNFKLDAASVSNSNGYGGVPSELQSQSSGDRSDLNGFDGGSATISIHVLRQVTNNFSEENILGRGGFGVVYKGELPDGTKIAVKRMESVAMGNKGMNEFQAEIAVLSKVRHRHLVALLGYCINGNERILVYEYMPQGTLTQHLFEWRELGCASLTWKQRVAIALDVARGVEYLHSLAQQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKVDVYAFGVVLMELITGRRALDDTLPDERSHLVTWFRRVLINKENIPKAIDQTLEPDEETMESIYKVAELAGHCTAREPYQRPDMGHAVNVLVPLVEQWKPTRNAEEDNGGIDLQMSLPQALQRWQANEGTSTMFDMSYSQTQSSIPSKPAGFADSFDSMDCR 922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60580g00016 922 SMART serkin_6 575 855 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60580g00016 922 FunFam receptor protein kinase TMK1 653 870 - -
Stsc60580g00016 922 ProSiteProfiles Protein kinase domain profile. 575 855 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60580g00016 922 MobiDBLite consensus disorder prediction 901 922 - -
Stsc60580g00016 922 SUPERFAMILY L domain-like 35 426 - -
Stsc60580g00016 922 Pfam Protein tyrosine and serine/threonine kinase 578 849 IPR001245 GO:0004672|GO:0006468
Stsc60580g00016 922 FunFam receptor protein kinase TMK1 537 652 - -
Stsc60580g00016 922 Gene3D Ribonuclease Inhibitor 21 314 IPR032675 -
Stsc60580g00016 922 FunFam Receptor-like kinase TMK4 21 314 - -
Stsc60580g00016 922 Pfam Leucine rich repeat N-terminal domain 22 56 IPR013210 -
Stsc60580g00016 922 Pfam Leucine rich repeat N-terminal domain 322 355 IPR013210 -
Stsc60580g00016 922 PANTHER OSJNBA0070M12.3 PROTEIN 10 922 - -
Stsc60580g00016 922 Pfam Leucine rich repeat 362 417 IPR001611 GO:0005515
Stsc60580g00016 922 SUPERFAMILY Protein kinase-like (PK-like) 558 851 IPR011009 -
Stsc60580g00016 922 MobiDBLite consensus disorder prediction 439 468 - -
Stsc60580g00016 922 ProSitePatterns Protein kinases ATP-binding region signature. 581 603 IPR017441 GO:0005524
Stsc60580g00016 922 ProSitePatterns Serine/Threonine protein kinases active-site signature. 700 712 IPR008271 GO:0004672|GO:0006468
Stsc60580g00016 922 Gene3D Ribonuclease Inhibitor 318 441 IPR032675 -
Stsc60580g00016 922 Gene3D Transferase(Phosphotransferase) domain 1 653 875 - -
Stsc60580g00016 922 CDD STKc_IRAK 581 854 - -
Stsc60580g00016 922 FunFam Leucine-rich repeat receptor-like kinase 318 441 - -
Stsc60580g00016 922 MobiDBLite consensus disorder prediction 452 468 - -
Stsc60580g00016 922 Gene3D Phosphorylase Kinase; domain 1 540 652 - -
Stsc60580g00016 922 ProSiteProfiles Leucine-rich repeat profile. 382 405 IPR001611 GO:0005515
Stsc60580g00016 922 SMART LRR_typ_2 380 404 IPR003591 -
Stsc60580g00016 922 SMART LRR_typ_2 105 128 IPR003591 -
Stsc60580g00016 922 SMART LRR_typ_2 179 202 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60580g00016 Stsc-Chr60580 80049 84039 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60580g00016 61 851 Receptor kinase-like Gene Family AT5G07280 32.603 9.84e-94 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Stsc60580g00016 PK_Tyr_Ser-Thr 2.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60580g00016 K00924 - gmx:100286794 1361.28