Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60578g00017 ATGGGCAATCAGAAGCAAAAATGGACGCAGGATGAAGAAGACGCTCTCATCGCTGGTGTTGAGAAGCACGGCCCTGGCAAGTGGAAGAACATCCTCAAAGATCCCCAATTCGCACCTTTCCTCACTTCACGTTCCAACATCGACCTCAAGGATAAGTGGCGAAACTTGAGTGTTAGCAATGGCACTCAAGGGTCCAAAGAAAAATCTAGGGTTCCGAGAATCAAAGCTGCTGCTCCTGCTACTGCTACCCCTGTTGCTGCTTGTAATGCCGTTGTTGCTGCTGGGGAAGATGCTACTCCTGTCACTAATGCGACTCAACCTGATCCTTCTTCTGTTGCTGTGGGTGATTCCGCTCAGTATGAAGAAGATGCCAAGAATCGTCCGCGGTACAATGCAATGGTTCTTGAAGCGTTGTCAGCTCTGAAAGATGCCAATGGATCTGACCTGAATGCCATTGTTAATTTTATTGAGCAAAAACACAAGGTTCCTCAGAATTTCCGAAGGGCATTGAGTACAAGGTTGAGGAGGCTTGTTAGTCAAGGGAAACTTGAAAAGGTACAAAACTGTTACAAGATTAAAAAGGAATCTTCATCCTTGCCAAAATCACCAGTTGCTGTGAAAAAAGATGTGTGGCCACAACGGCAACAACCACAACCACAACCACCCCCCGAGTTTGTGGCAACTAATGAGACAATAAAGGAAGCTGCTGAAACGGCAGCCTACAGAATTGCCGAGGCTGAAAGCAAGTCATATTTAGCCGCTGAAGCAGTCAAGGAGGCAGAACGAATTGCACTCTTAGCTGAAGACGCTGAGGCGATGTTACAGCTAGCACAACAGATTTATGATGCTTGTTCGCGCGGGGAATCTGTCGTCTTGGCATCTTAA 885 0.4701 MGNQKQKWTQDEEDALIAGVEKHGPGKWKNILKDPQFAPFLTSRSNIDLKDKWRNLSVSNGTQGSKEKSRVPRIKAAAPATATPVAACNAVVAAGEDATPVTNATQPDPSSVAVGDSAQYEEDAKNRPRYNAMVLEALSALKDANGSDLNAIVNFIEQKHKVPQNFRRALSTRLRRLVSQGKLEKVQNCYKIKKESSSLPKSPVAVKKDVWPQRQQPQPQPPPEFVATNETIKEAAETAAYRIAEAESKSYLAAEAVKEAERIALLAEDAEAMLQLAQQIYDACSRGESVVLAS 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60578g00017 294 SMART h15plus2 124 189 IPR005818 GO:0000786|GO:0003677|GO:0006334
Stsc60578g00017 294 MobiDBLite consensus disorder prediction 200 225 - -
Stsc60578g00017 294 SUPERFAMILY Homeodomain-like 2 59 IPR009057 -
Stsc60578g00017 294 Pfam linker histone H1 and H5 family 128 187 IPR005818 GO:0000786|GO:0003677|GO:0006334
Stsc60578g00017 294 SUPERFAMILY "Winged helix" DNA-binding domain 125 200 IPR036390 -
Stsc60578g00017 294 FunFam Telomere repeat-binding factor 1 8 86 - -
Stsc60578g00017 294 Gene3D - 122 209 IPR036388 -
Stsc60578g00017 294 FunFam Telomere repeat-binding factor 1 122 203 - -
Stsc60578g00017 294 FunFam Telomere repeat-binding factor 1 2 58 - -
Stsc60578g00017 294 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Stsc60578g00017 294 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Stsc60578g00017 294 MobiDBLite consensus disorder prediction 100 125 - -
Stsc60578g00017 294 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 126 194 IPR005818 GO:0000786|GO:0003677|GO:0006334
Stsc60578g00017 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Stsc60578g00017 294 CDD H15 127 208 IPR005818 GO:0000786|GO:0003677|GO:0006334
Stsc60578g00017 294 SMART sant 4 59 IPR001005 -
Stsc60578g00017 294 Gene3D - 8 84 - -
Stsc60578g00017 294 CDD SANT_TRF 6 56 - -
Stsc60578g00017 294 PANTHER SINGLE MYB HISTONE 4 1 292 IPR044597 GO:0003691
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60578g00017 Stsc-Chr60578 79520 81970 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60578g00017 1 292 Single Myb Histone (SMH) Gene Family AT1G17520 50.340 3.77e-81 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Stsc60578g00017 Linker_histone 3.5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60578g00017 K09422 - gmx:780537 365.54