Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60578g00013 ATGGATCATTACAAGGTTCTAGGGTTACACAGAACCGCATCGAAGGCAGAGATCAAAGCTGCCTTCCAGAAATTGGCCTTTCAATTCCATCCAGACAAGCACTCCCACTCCCCCAAGATCGTCAGGGACAACGCCACGCTCCGATTCAAGCAGGTCTCTGAGGCATATGAGGTCCTCATGGACGATCGCAAGCGCGCCGATTACAATTTCCGATCTCGCTCCACCGCTGCCGCTGGTAGCAGCAATTACTATTCACAGTATTCTTATGGATACGGTAGGGCTGGGAGGAGTAGTAGTTATGAACAGAGGTCTAGGCATAAATATGGCGGTGGCGGCAGCGGCGGCGGCGGAATTGCTTCGAAGTTTGAGCTTGCTATTCGAATTTTGACTGCGCGATCTTCTCTCCTCAATCTCGGCTTTGCAGCAGCTATATTGGGTGGAATAGTTGTCATTGATAAAAGTGGAGAATCTTTGTGGGAGAGGCAAAATTCTGGGAAATCATTTGAAGAAGCCATGAAGTCTATTGAGAAAGCCAAAGCATATAGAGATGATAGCGTGAAGGAACGTACTTGA 573 0.4834 MDHYKVLGLHRTASKAEIKAAFQKLAFQFHPDKHSHSPKIVRDNATLRFKQVSEAYEVLMDDRKRADYNFRSRSTAAAGSSNYYSQYSYGYGRAGRSSSYEQRSRHKYGGGGSGGGGIASKFELAIRILTARSSLLNLGFAAAILGGIVVIDKSGESLWERQNSGKSFEEAMKSIEKAKAYRDDSVKERT 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60578g00013 190 CDD DnaJ 2 61 IPR001623 -
Stsc60578g00013 190 Gene3D DnaJ domain 1 92 IPR036869 -
Stsc60578g00013 190 SMART dnaj_3 1 64 IPR001623 -
Stsc60578g00013 190 PRINTS DnaJ domain signature 4 22 IPR001623 -
Stsc60578g00013 190 PRINTS DnaJ domain signature 44 64 IPR001623 -
Stsc60578g00013 190 PRINTS DnaJ domain signature 96 115 IPR001623 -
Stsc60578g00013 190 PRINTS DnaJ domain signature 22 37 IPR001623 -
Stsc60578g00013 190 FunFam DnaJ domain protein 1 91 - -
Stsc60578g00013 190 PANTHER CO-CHAPERONE PROTEIN DJLA 4 100 - -
Stsc60578g00013 190 ProSiteProfiles dnaJ domain profile. 2 72 IPR001623 -
Stsc60578g00013 190 ProSitePatterns Nt-dnaJ domain signature. 49 68 IPR018253 -
Stsc60578g00013 190 Pfam DnaJ domain 2 69 IPR001623 -
Stsc60578g00013 190 SUPERFAMILY Chaperone J-domain 1 70 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60578g00013 Stsc-Chr60578 60432 62766 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60578g00013 3 69 C2H2 Transcription Factor Family AT1G74250 40.299 8.60e-11 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60578g00013 - - gmx:100782769 262.692