Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60578g00011 ATGGCACATAAGAGGATAAGAGAACGGCTTCGCAGAAGCGCTCTTTATACATTTGGATGTCTGGGAACACGAACAAGAGATGACGACCAGCCCCACGCGCTACACGGCGCTGGATACACGCGCACCGTGCAATGCAACCAGCCACACCTTCACGAAAACAAACCCCCTTATTATTGCAAGAACAACATTTCCACAACCAAATATAACGCTATCACGTTTCTTCCAACCGCACTCTTTGAACAATTCAGAAGGGTCGCTAATATCTACTTTCTTTTGGCCGCACTTCTCTCTGTTTTCCCGATCTCGCCTTTTAGTCCAATAAGCATGATTGCTCCCCTGGCCTTCGTCGTGGGGCTTAGTATGGCGAAGGAAGCTTTGGAAGATTCTAGAAGGTTCCTTCAGGATCGCAAGGTTAATAAACGGAATGTAAGTCACCATGCTGGGAATGGCGTTTTTGAACCTAAGGCATGGAAGGATATTAGGGTTGGCGATGTTGTTAAGGTAGAAAAAGATGAATTCTTCCCTGCGGATCTGCTTTTCTTGTCATCAAGCTATGAGGATGGGATTTGCTATGTTGAAACAATGAATTTAGATGGAGAGACTAATCTCAAGGTGAAAAGATCTCTAGAAGCTACCTTGGGTCTTGATAGTGACGAAACTTTCAAGGATTTTACAGGAACAATTCAAGGCGAAGATCCGAATCCGAGTTTGTATACTTTTGTTGGGAACTTTGATTATGAACGCCAGGTTTATCCTCTTGACCCGAGTCAAATCTTGCTCCGTGATTCTAAGCTCAGAAACACTGATCATATCTATGGAGTTGTGATTTTCACTGGTCATGACACAAAAGTGATGCAGAATTCAACACATTCCCCTTCGAAAAGGAGCTCAATTGAAAAGAAGATGGATTTGATCATTTACATTCTCTTCGCTGTTCTTGTTATCATATCGGTTATGAGTTCCGTAGGGTTCATGATCAAGACTAAGTACAAGGCTCCAAACTCGTGGTTCTTGAGGCCTGATAACATTGAAGTTCAGTATGATCCACAGAAGCTTGGTTTGGCTGGGTTGAGTCATTTGGTTACCGCACTCATTCTTTACGGGTACCTGATACCGATATCACTTTATGTATCGATCGAGATCGTGAAAGTATTACAAGCAAGCTTTATTAATCAGGATATTCATATGTATGATGAAGATACCGGAACCGCAGCTGATGCGAGGACATCGAATTTGAACGAAGAGTTGGGACAAGTTGACACCATACTTTCTGATAAAACCGGAACTTTAACATGCAACCAGATGGACTTCTTGAAATGCTCCATTGCTGGTGTTGCATACGGTGTGCGTGCGAGCGATGTGGAACTCGCGGCGGCGAAGCAAATGGCTTCTGATGTTGATAACGATTCGGAGAGTGATGGTTATGAGAATAATAGTGGTTGGGAGAGTTCAAAAAAGGCTCCAATAAAAGGATTTGGGTTTGAGGATGAACGTTTGATGAATGGAAAGTGGGTGAAAGAGGCAAATGTTGATGACCTTTTGTTGTTTTTTCGGATATTGGCGGTTTGCCACACTGCGATTCCTGATTATAATGAAGTGACTGGGACTTTTACATATGAGGCAGAGTCACCTGATGAAGGTGCTTTTCTTGCTGCGGCAAGAGAATTTGGGTTTGAGTTTTGTAGGAGGACTCAGTCAAGTGTTTTCATACGTGAAAAATATACTAATCATGGAAAAGTGGTTGAAAGAGAATTCAAACTCTTGAATTTGCTTGATTTCTCTAGCAAAAGGAAACGTATGTCAGTAATTGTAAGAGATGAAGATGGAAACATTATTCTTATGTGCAAGGGTGCTGATAGTATAATATTTGATCGTTTGGCAAAGAATGGAAAGAAGTATTTGGAATCTACAACAAGGCATTTAAATGAATATGGAGAAGCCGGGTTGAGAACGCTAGCCTTGTCTTATAAGAGGCTTGGTGAAGAAGAATATTCCGCTTGGAACAATGAGTTTCAGAAGGCCAAAACCTCTGTTGGGGTTGATAGAGAAGCAACTCTTGAACGAGTTTCAGAGATGATGGAAAAAGACTTGATACTTGTTGGGGCTACAGCTGTTGAAGATAAACTTCAAAAAGGGGTTCCCCAGTGCATTGACAAACTTGCCCAGGCAGGGCTAAAGATCTGGGTATTGACTGGTGATAAAATGGAAACAGCAATCAACATTGGATTTGCATGCAGTTTGCTACGACAGGGCATGCAGCAGATCTGCATAACTGTTCCAAATTTAGAAGCAATGAGTGCCAGTGATAGCACCAAAGAGGCCATCAAAGATAACATTTTGAACCAAATTACCAATGCATCTCAAATGATAAAGCTAGAGAAGGATCCTCATGCTGCATTTGCATTAATTATTGATGGAAAAACTTTGACCTATGCTTTAGAAGATGATATGAAGCAACTCTTCCTTGCTTTGGCCGTTGATTGTGCTTCAGTCATTTGCTGTCGTGTCTCTCCCAAGCAAAAGGCTTTGGTAACAAGGTTAGTGAAAGAAGGAACCAAGAAGACCACCCTAGCAATAGGTGATGGTGCAAATGATGTTGGCATGATTCAAGAAGCAGATATTGGTGTTGGAATCAGTGGGGTTGAAGGGATGCAGGCTGTGATGGCTAGTGACTTCTCTATTGCCCAGTTTCAGTTTTTAGAGAGACTTCTAGTAGTCCATGGGCACTGGTGTTATAAGAGAATTGCACAAATGATATGTTATTTCTTCTACAAGAACATAGCATTTGGACTAACCATCTTCTACTTTGAGGCCTTCACAAGCTTCTCTGGTCAATCAGTTTATGATGACTGGTACATGATATTGTTCAACGTTGTTCTCACATCCTTGCCTGTCATTTCTCTTGGTGTTTTAGAGCAAGATGTTCCCTCAGAAGTTTGCTTAGAGTTTCCTGCACTGTATCAGCAAGGACCAACAAATTTGTTCTTTGATTGGTATAGAATACTGGGATGGATGGCCAACGGTGTTTACTCTTCATTAGCCATCTTCTTCTTTACCATCGTAATCTTCTACGACCAAGCATTCCGGTCCGACGGCCAAACCGCCGACATGGCTGCCGTCGGCACCGCAATGTTCAGCAGCATAATTTGGGCCGTGAACTGTCAAATAGCCCTAACAATGAGCCATTTCACATGGGTTCAACATGTTTTCGTTTGGGGAAGCATAGCCACTTGGTACATCTTCCTCTTCTTTTATGGTGCACTTTCACCAACGTATTCCAAGACTGCCTATCAAATACTGGTTGAATCGCTTGGACCTGCCCCGATCTATTGGGTAGCAACGTTCTTGATAGCTGTTTCTTGCTTCCTTCCATATCTGACTCACATAGCCATCCAGAGATGTTACAATCCCATGGATCATCATATTATTCAAGAGATTAAGTATTACAAGAAGGATATTGAAGATAAGCACATGTGGAAGAGGGAGAAATCTAAGGCCAAACAAGAGACTAAGATTGGATTCACTGCAAGAGTTGATGCCAAGATCAGACAGTTGAAGGAAAGGCTACATATAAAACAGCAACATTCTCATCATAACCTAACCAGTTCACCCCAACAACAACAACAAGCCAACCTATTGTAA 3642 0.4206 MAHKRIRERLRRSALYTFGCLGTRTRDDDQPHALHGAGYTRTVQCNQPHLHENKPPYYCKNNISTTKYNAITFLPTALFEQFRRVANIYFLLAALLSVFPISPFSPISMIAPLAFVVGLSMAKEALEDSRRFLQDRKVNKRNVSHHAGNGVFEPKAWKDIRVGDVVKVEKDEFFPADLLFLSSSYEDGICYVETMNLDGETNLKVKRSLEATLGLDSDETFKDFTGTIQGEDPNPSLYTFVGNFDYERQVYPLDPSQILLRDSKLRNTDHIYGVVIFTGHDTKVMQNSTHSPSKRSSIEKKMDLIIYILFAVLVIISVMSSVGFMIKTKYKAPNSWFLRPDNIEVQYDPQKLGLAGLSHLVTALILYGYLIPISLYVSIEIVKVLQASFINQDIHMYDEDTGTAADARTSNLNEELGQVDTILSDKTGTLTCNQMDFLKCSIAGVAYGVRASDVELAAAKQMASDVDNDSESDGYENNSGWESSKKAPIKGFGFEDERLMNGKWVKEANVDDLLLFFRILAVCHTAIPDYNEVTGTFTYEAESPDEGAFLAAAREFGFEFCRRTQSSVFIREKYTNHGKVVEREFKLLNLLDFSSKRKRMSVIVRDEDGNIILMCKGADSIIFDRLAKNGKKYLESTTRHLNEYGEAGLRTLALSYKRLGEEEYSAWNNEFQKAKTSVGVDREATLERVSEMMEKDLILVGATAVEDKLQKGVPQCIDKLAQAGLKIWVLTGDKMETAINIGFACSLLRQGMQQICITVPNLEAMSASDSTKEAIKDNILNQITNASQMIKLEKDPHAAFALIIDGKTLTYALEDDMKQLFLALAVDCASVICCRVSPKQKALVTRLVKEGTKKTTLAIGDGANDVGMIQEADIGVGISGVEGMQAVMASDFSIAQFQFLERLLVVHGHWCYKRIAQMICYFFYKNIAFGLTIFYFEAFTSFSGQSVYDDWYMILFNVVLTSLPVISLGVLEQDVPSEVCLEFPALYQQGPTNLFFDWYRILGWMANGVYSSLAIFFFTIVIFYDQAFRSDGQTADMAAVGTAMFSSIIWAVNCQIALTMSHFTWVQHVFVWGSIATWYIFLFFYGALSPTYSKTAYQILVESLGPAPIYWVATFLIAVSCFLPYLTHIAIQRCYNPMDHHIIQEIKYYKKDIEDKHMWKREKSKAKQETKIGFTARVDAKIRQLKERLHIKQQHSHHNLTSSPQQQQQANLL 1213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60578g00011 1213 SFLD Haloacid Dehalogenase 407 910 - -
Stsc60578g00011 1213 Gene3D - 113 289 - -
Stsc60578g00011 1213 Pfam Cation transport ATPase (P-type) 523 626 - -
Stsc60578g00011 1213 PRINTS P-type cation-transporting ATPase superfamily signature 423 437 - -
Stsc60578g00011 1213 PRINTS P-type cation-transporting ATPase superfamily signature 859 878 - -
Stsc60578g00011 1213 MobiDBLite consensus disorder prediction 1193 1213 - -
Stsc60578g00011 1213 MobiDBLite consensus disorder prediction 1196 1213 - -
Stsc60578g00011 1213 NCBIfam phospholipid-translocating P-type ATPase 58 1145 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Stsc60578g00011 1213 Pfam Phospholipid-translocating P-type ATPase C-terminal 887 1137 IPR032630 -
Stsc60578g00011 1213 Gene3D - 567 700 IPR023299 GO:0000166
Stsc60578g00011 1213 SUPERFAMILY Calcium ATPase, transduction domain A 148 287 IPR008250 -
Stsc60578g00011 1213 Gene3D - 701 899 IPR023214 -
Stsc60578g00011 1213 Pfam Phospholipid-translocating ATPase N-terminal 43 110 IPR032631 -
Stsc60578g00011 1213 SUPERFAMILY Calcium ATPase, transmembrane domain M 57 1135 IPR023298 -
Stsc60578g00011 1213 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 430 664 IPR023299 GO:0000166
Stsc60578g00011 1213 FunFam Phospholipid-transporting ATPase 119 289 - -
Stsc60578g00011 1213 NCBIfam HAD-IC family P-type ATPase 830 941 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc60578g00011 1213 SUPERFAMILY HAD-like 411 903 IPR036412 -
Stsc60578g00011 1213 ProSitePatterns E1-E2 ATPases phosphorylation site. 425 431 IPR018303 -
Stsc60578g00011 1213 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 35 1166 - -
Stsc60578g00011 1213 FunFam Phospholipid-transporting ATPase 567 698 - -
Stsc60578g00011 1213 SFLD p-type atpase 407 910 IPR044492 -
Stsc60578g00011 1213 FunFam Phospholipid-transporting ATPase 700 899 - -
Stsc60578g00011 1213 CDD P-type_ATPase_APLT_Dnf-like 61 1019 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60578g00011 Stsc-Chr60578 43310 49425 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60578g00011 1 1195 Primary Pumps ATPases AT1G17500 72.093 0.0 1840
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60578g00011 K01530 - gmx:100819559 1952.56