Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60578g00006 ATGTCATCTTCTTGTACAACAAAGTACGATGTATTCATTAGCTTCAGAGGCGAGGACACCCGCGAAACCTTCACTGTGCATCTGTTTAACGCACTGGAAAACAAGACAATCCGGGTATACATGGATTGTTTTCTCCATAGAGGAGACGAAGTGTGGCCGGCACTCGAGAAAGCGATCGAGAGCTCGCTAATCTCGATCGTGGTTTTCTCGGAGAACTATGCGACTTCAAAGTGGTGCTTGGAGGAGCTGGTAAAGATTCTTGAATGGAGGGAAGATCATGGCCAAGTTGTTATACCGGTGTTCTATAGAACAGATCCGTCGCATATACGGAACCAGAGTGGGAGTTTTGAGAGGGCGTTTGCTAAATATGAAAGAGATATTGCAGAGAGCGAATCCAACAGAGTGAAGATAAGCAGGTGGAGAGAAGCTCTCAAGAAATCATCTAATATATCTGGATGGCACTCCAGCAACTATGCGGACGACCATGAGCTGATCAGAAAGGTGGTGAATGATGTGCTGAAAATGCGTATCCTAAAGCACCCAATTGTGCCAACAGGCCTTGTTGGGACTGATGAAATCCATAGAAGTGTTAAATTCTACATGAAGCAACATCGAGTTATGGGAATCTGGGGTATGCGCGGAGTAGGCAAGACCACCATTGCTAAAATGTTATTTGCAAAATACTTTCCTCATTATGACCATGTCTGCTATGCTGAAGATGCAAGAGAATATACTCCTCAAAGGGTTCTTTCGGATCTATTAAGGGAACAAATCTCCACTGATACAACAGGCTTTGTCAACAGCATGAGTAGCCTTAGCAACAAGAAAGTTCTCATTGTTCTAGACAATGTCAAAGATTATGATCAACCATTGTTAGAAGCAGTGTGCCAAGGGTTCAAGAGACATAGTAGACAAAGTAAACTTATTATAACAACATCTCATAAGGATTTGCTTGAAAAGAGAGTTGACTTTATTTTCGAGGTCAAACAATGGGATGATGCAAAATCTATAGAGCTTCTTAGCCTTAAAGCATTTGAGGAAAGCAACCCTCCAAAGCATTATGAGATTCTTGTGAATAAGTTTGTTGAGTATGCAGGGGGAATTCCTTTAGCTTTGAATCTTTTGGGTTCATATCTTAGATCCAAGAGCATTCAGTTCTGGGAAAGTACTTTGGAAAAGCTTCAGAAGCATCCTATTAAGCAGATTCAGGCTGCCTTTACAGAGAGTTATGATGAATTGGAGAAGCTAGACAAGGAGATATTTCTTGACATTGCATTCTTCTTCCATGGAGAAAAGAAAGATCTTGTCACAAGCATATTAAAAGCCTGTGATTTCTCACCACTAAGAGGAATAGAGATCCTTCAAGATAAAGCATTGATTACTATTATTCCATATAAAGAAACAATTGACATGCATGGATTGCTAAAAGAAATGGCTTATGAGATTGTTCACGAGGAAAATAGTAAAGACCCTAGAAAACGTAGCAGATTGAGGGATACTGAAGACATTTGTGATGTACTCAAAGAGAACAAGAAATCGCTTGATGCAATTGAAGGCATAATATTAGATTTGTCTCAGATTAAGGACTTGCGTTTGAGTCCTGATGCATTTAAAAGGATGAATAGCTTGAGATTTCTAAAATTATATATCCCCTCGGGTCAGAGTTCTGGTAAGATGATCCTTCCTAAAGATCTTGAGCCATTTTCTGATAAACTAAGGTACTTTGAGTGGCATCAGTACCCTTTCAAGTCTCTTCCACCAAGTTTTTGTGCTAAGTTACTTGTTGAGATTCGCATACCGCACAGCCATGTCAAGAGACTTTGGCAGGAAAAGCAGGAACTTGAGCATTTAGAAGGGATCGACTTAAGCGAATGCAAAGAGTTAGGAGAGCTTCCAGATTTGTCTGAGGCTAAAAGACTCAGATGGGTGAATCTCTCTGGTTGTGAGAGTTTGGCTATTCTTCATTCATCTGTTTTTTCCTCCAACACACTAGTTTCTTTGATACTGGATAGGTGCACAAATTTGCAGAGTGTTAAGGCCGAAAGGCATCTGAATTCGCTGCAGCACATAAGTGTCAAAGGCTGCTCAAATCTCAAAGAATTTGCAGTATCATCAGATTTAATTGAAAACTTGGATTTGAGTAACACAGAGGTTGAAAAGCTGGACAGATCAATCGGGAAATTACTGAAGCTTGAATGCCTCAATCTAGAAGGTTCAAGAGTCAAGCATCTTCCAAAGGAGCTATCAGCCCTAAAATTGCTTAAGGAGTTGAAGCATTCATATAGTGGACTAGAAATTGACAACCAGCAGCTGCAAGACCTGTTTAACGGTTTATCATCTCTACAAATACTACATTTGAAGGACTGTAGACAATTTTTTGTGTTCCCTGACAACATCAATGCCTTATCGAAATTGCGCGAGTTAAGGCTAGATGGAAGCAATGTGATCTGGTTGCCTGCAACCATCAAGCGTCTTAAAGAGTTGGAAATTTTGTCCCTAAATAATTGCAGCTCTCTTGAGACACTGCCAGAGCTTCCATCCTCTATCAAGGACTTCTCTGCTGATAACTGCACCTCATTGAAGTCTGTATCAGCTCTAAGTAATCTGGCAACAAAGATGGTGGGGAAGACAAAACGCATCTCATTCAATAATAGCTTGAAGCTGTCAGCCGGACACACATTGCATTCGATCATGGAAAGCATCCATTCAACAATGCTGAGTGCTGTATCTAGCAATGTCAAGAGAAGAAGCTATGCAACTGATGTCCATAGCAACAATTACAATAGTGTGGAGGTTTCTTTGCCTGGAGACACAATCCCTGAGAGATTTGCATATAAAACAGCGAAATCCTCCTCCATAACAATTGAACTCCCTGACTCTCCTACCAACTTTCTTGGGCTTATCTATTCAGTTGTTCTGTCACCGCGTCGTGGAATGAACAAGCACGGTGCCAAAATCAGATGCAAATACAACTTTGCAGGAGGCAAGAATTATTCTTGGGAAGACATAAGCATAAGTGAATTGAACTCAGATCATGTATATATATGGTATGATCCATTCCTCACTGATAAAATTCTTGGACAGTATAAGCCAAGTTTTCATCTCAAGTTCAGTGTGGCAACTGACACTGGGGAAGTTGATGACTCCATTGTTATTAAAGAGTGTGGTGTTCAAATCATAAATGAATCAGAACTGCAGAGATTTTTACTGGAGTTGGATAAGAGGAAAAAGGACTTGGAGGAGGAATCATCAGATCAGCAGTTACATCCACCACCCGGATCTCAAGATCACAGCCTTGTCCAGACTCCACCTCAACGCTTGAAGAAAGAAAGATTTGATGAGAAGCAGCGCAATGATACTGAAAGCCAGATATCAAAGCAACAAATAGAAATGAATGAGCAATCATCTTTTGATTGGAAAATCCAAGAGATGATGGAATCCACTCCCAATGAAAACATGACTAGTGGTGGAAAAAGTCAAGAGGAGAATGAGATAATCAAAGGCAAAGGAAATGAAGAATCACCAACTGAATCAGTTAAAAACAATGTGTTGGAGGACATTTCATATGATCAGCCAGATAGTATGGAAGAGGCCAAACATTTGGAAGAAAAGCAAAATGGAAAGGAAACAATGGATCTTGAAGCATCTGATTGTCAAGACCACACTAGCAATGCAGAACAAACTGAAAACGTAGATGCTAAGAAAATGCAACAACTACGCAAAGAAAAAACTATTGCGTACTCTCAATCCATTCATCCCAGCGCACCTTCACACGGTGAGAAGAGAGCTTCTGAGTTGACTATGAAAGAACTCCACCGCCACTTTAAGAAGATAGCTAAGAAGGCAAAAGTTGAAAGCAACCCTACAACTGCAACTCTAGCTACAAATTTAGCCATAGAAGTTTTTCATCCTTCCAGTTCCAAGATTAAAGGCAAAAGTGTAGAAGATATCCATTTGAACCAGGTTCCAACTCCAAATACTTCTACTTCCATTGCACAAATGCATGATAAAATTACTATACCCTCCCTGTATGATCCTCAAGATGCTCTAGAGTTGCTAAAACACTTCCATGCATCAGCTAAACGCCTCCAAATAACAGAGTTTGTGGACAATCATGTTGTATATCCATATGATCATTCCATTACAAAAGACCTTGATGTTTCTGCACTTTGTCATTGGCTTCAAGTTCAAGCGCTTCGTTCAGTGAGTGTTGCGAGATACGCTGAGATGAAGTTCGAAGCGGCCAAACGGGAAAGTGAGGAAGAATTAAGACTTGCAAGAGAAGAAAATGCAAAGGTTGAAGAGGCTTTGAAAACAATGGAGGAGAGGGTTTCACGTGTCGAATCGTTAGAGAAAAGAGTTGAGGATTTGAACTCTGAGGTGGCTTGTTGGAGAAGTAAATATGAAGAAACTCAAAAAAAACTTGAAGATGAGAATCGAGAATGGCAAGAGAAGGAATCCTCCTGGGAAACAAGAGAGAGTGAGCTGATGAAGGAGGTGGCAACTCATTTTACTGTTAGCTCCTTTCAAAATTGCAGGTTGCAGGTTTCCACTTTGTATCCAAACATTGATTTAAGTAGGCTAGGAGCTTTTAAGGAGATTCAAAATGGGGAGATAGTATCCCCGTCTGATTCGGAGGAAACTCAGAGTGAAGAAGACACCATGGCTATCTCTGGGGAACTTTGA 4686 0.4052 MSSSCTTKYDVFISFRGEDTRETFTVHLFNALENKTIRVYMDCFLHRGDEVWPALEKAIESSLISIVVFSENYATSKWCLEELVKILEWREDHGQVVIPVFYRTDPSHIRNQSGSFERAFAKYERDIAESESNRVKISRWREALKKSSNISGWHSSNYADDHELIRKVVNDVLKMRILKHPIVPTGLVGTDEIHRSVKFYMKQHRVMGIWGMRGVGKTTIAKMLFAKYFPHYDHVCYAEDAREYTPQRVLSDLLREQISTDTTGFVNSMSSLSNKKVLIVLDNVKDYDQPLLEAVCQGFKRHSRQSKLIITTSHKDLLEKRVDFIFEVKQWDDAKSIELLSLKAFEESNPPKHYEILVNKFVEYAGGIPLALNLLGSYLRSKSIQFWESTLEKLQKHPIKQIQAAFTESYDELEKLDKEIFLDIAFFFHGEKKDLVTSILKACDFSPLRGIEILQDKALITIIPYKETIDMHGLLKEMAYEIVHEENSKDPRKRSRLRDTEDICDVLKENKKSLDAIEGIILDLSQIKDLRLSPDAFKRMNSLRFLKLYIPSGQSSGKMILPKDLEPFSDKLRYFEWHQYPFKSLPPSFCAKLLVEIRIPHSHVKRLWQEKQELEHLEGIDLSECKELGELPDLSEAKRLRWVNLSGCESLAILHSSVFSSNTLVSLILDRCTNLQSVKAERHLNSLQHISVKGCSNLKEFAVSSDLIENLDLSNTEVEKLDRSIGKLLKLECLNLEGSRVKHLPKELSALKLLKELKHSYSGLEIDNQQLQDLFNGLSSLQILHLKDCRQFFVFPDNINALSKLRELRLDGSNVIWLPATIKRLKELEILSLNNCSSLETLPELPSSIKDFSADNCTSLKSVSALSNLATKMVGKTKRISFNNSLKLSAGHTLHSIMESIHSTMLSAVSSNVKRRSYATDVHSNNYNSVEVSLPGDTIPERFAYKTAKSSSITIELPDSPTNFLGLIYSVVLSPRRGMNKHGAKIRCKYNFAGGKNYSWEDISISELNSDHVYIWYDPFLTDKILGQYKPSFHLKFSVATDTGEVDDSIVIKECGVQIINESELQRFLLELDKRKKDLEEESSDQQLHPPPGSQDHSLVQTPPQRLKKERFDEKQRNDTESQISKQQIEMNEQSSFDWKIQEMMESTPNENMTSGGKSQEENEIIKGKGNEESPTESVKNNVLEDISYDQPDSMEEAKHLEEKQNGKETMDLEASDCQDHTSNAEQTENVDAKKMQQLRKEKTIAYSQSIHPSAPSHGEKRASELTMKELHRHFKKIAKKAKVESNPTTATLATNLAIEVFHPSSSKIKGKSVEDIHLNQVPTPNTSTSIAQMHDKITIPSLYDPQDALELLKHFHASAKRLQITEFVDNHVVYPYDHSITKDLDVSALCHWLQVQALRSVSVARYAEMKFEAAKRESEEELRLAREENAKVEEALKTMEERVSRVESLEKRVEDLNSEVACWRSKYEETQKKLEDENREWQEKESSWETRESELMKEVATHFTVSSFQNCRLQVSTLYPNIDLSRLGAFKEIQNGEIVSPSDSEETQSEEDTMAISGEL 1561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60578g00006 1561 FunFam Disease resistance protein (TIR-NBS-LRR class) 5 177 - -
Stsc60578g00006 1561 Gene3D - 177 325 IPR027417 -
Stsc60578g00006 1561 Gene3D - 331 414 IPR042197 -
Stsc60578g00006 1561 MobiDBLite consensus disorder prediction 1079 1132 - -
Stsc60578g00006 1561 Pfam NB-ARC domain 203 414 IPR002182 GO:0043531
Stsc60578g00006 1561 Coils Coil 399 419 - -
Stsc60578g00006 1561 Gene3D Ribonuclease Inhibitor 474 706 IPR032675 -
Stsc60578g00006 1561 Gene3D Ribonuclease Inhibitor 707 922 IPR032675 -
Stsc60578g00006 1561 SMART till_3 8 150 IPR000157 GO:0007165
Stsc60578g00006 1561 SUPERFAMILY L domain-like 522 872 - -
Stsc60578g00006 1561 Coils Coil 1062 1089 - -
Stsc60578g00006 1561 MobiDBLite consensus disorder prediction 1103 1121 - -
Stsc60578g00006 1561 SUPERFAMILY "Winged helix" DNA-binding domain 401 508 IPR036390 -
Stsc60578g00006 1561 ProSiteProfiles TIR domain profile. 7 176 IPR000157 GO:0007165
Stsc60578g00006 1561 MobiDBLite consensus disorder prediction 1538 1561 - -
Stsc60578g00006 1561 Pfam C-JID domain 934 1065 IPR045344 -
Stsc60578g00006 1561 MobiDBLite consensus disorder prediction 1087 1102 - -
Stsc60578g00006 1561 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 176 424 IPR027417 -
Stsc60578g00006 1561 PRINTS Disease resistance protein signature 206 221 - -
Stsc60578g00006 1561 PRINTS Disease resistance protein signature 365 379 - -
Stsc60578g00006 1561 PRINTS Disease resistance protein signature 271 285 - -
Stsc60578g00006 1561 PRINTS Disease resistance protein signature 823 839 - -
Stsc60578g00006 1561 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 153 IPR035897 -
Stsc60578g00006 1561 Gene3D - 5 176 IPR035897 -
Stsc60578g00006 1561 Pfam TIR domain 8 174 IPR000157 GO:0007165
Stsc60578g00006 1561 Coils Coil 754 774 - -
Stsc60578g00006 1561 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 9 701 IPR044974 GO:0006952
Stsc60578g00006 1561 Coils Coil 1409 1492 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60578g00006 Stsc-Chr60578 20163 27325 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60578g00006 4 831 WRKY Transcription Factor Family AT4G12020 29.777 3.13e-81 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60578g00006 - - aip:110266592 2501.47