Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60578g00004 ATGGATCGTCTTCTCAAGGGAGGAGAAGAAATCTGGCCAACTCTCGAGAAAGCCATTGAGAACTCGCTGATGTCCATCGTGGTTTTCTCAGAAAACTTCGCCACCTCGAAGTGGTGCTTGGAAGAGCTCGTCAAGATTGTTCAATGGAGGGATCATCACGGTCAAGTTGTTATACCGGTCTTCTATAGAACAGAGCCGAGAGATGTACGGAGGCAGAGAGGGAGTTATGAGAAGGCGTTTGCTAAATACGAGAGAGAAGAGAAGGAATCCAACAGAGAGAAGATAAGCAAGTGGAGGCAGGCTCTCAAGGAAGCAGCTAATATATCTGGCTGGCATTCAACACACTATGAGGACGATGATGAACTTGCAAGAAAGGTTGTAAAAGATGTATTAGAAATGCGTATCCTAAAGCACCCCAATATACCAACAGGCTTGGTTGGAATAAAACAAATTCGTAAGAGCATTAAATTCAAGATGAAGCAACACGGAGTAATTGGAATTTGGGGTATGCCCGGAATAGGGAAGACAACCATAGCTAAAATGTTATTTGCAAAATTCTTTCCTCATTATGACTATGTTTGCTATGCGGAAAATGCAAAAGAATACACGCCTCAAAGACTTCTGTCGGAGCTATTAAGGGAACAGATTTCCACTGATGACGCAGGATTCGTGAACACTTTGAGGCGCCTTAGCAGCAGGAAAGTTCTCATTGTTCTCGACAATGTGAAGGAGTTTGATCAAACATTGTTAGAAGCAGTGTGCGAAGCGTACAAGAGCCACAGTCGAGACAGTAAACTTATTATAACAACCACACATAAGCATTTGCTTGAAAAGAGAGTTGAGTGGATATTAGAAGTCAAACAATGGAGCGATTCAAAAGCTATAGAGCTTCTTAGCCTCAAAGCATTCGAGGAAAGCACCCCTCCAAAGCCTTTTGAGAGTCTGGTAAATAAGGTTGTTAAGTATGCCGGGGGAATTCCATTAGCTTTGAACGTTTTGGGTTCATATCTTCGACACAAAAGCATTCAGTTCTGGGAAAGTACTTTGAAAAAGCTCCAGAGACATCCTCATCAGGACATTCATATTGCATTTAGAAAGATTTATGATGAACTGGATGAGCCAAACAAGGAGATATTTCTTGATATTGCATTCTTTTTCCATGGAGAAAAGAAAGATCTTGTCACAAGCATATTAGAAGCATGTAATTTCTCAGCAATAAATGGAGTAGAGGTCCTTCATGATAAAGCAATGATTACTACTATTCCATTTAAAGAAACAATTGACATGCATGGCTTGCTAAGAGAAATGGCTTACGAGGTCGTACACGAGGAAAATAGTAAAGACCCCAGAAAACGTAGCAGATTGAGGGATACTGAAGACATTTGTGATGTACTTAAAGAGAACAAGAAATCGCTTGATGCAATTGAAGGCATAATATTAGATTTGTCACAGATTAAGGACTTGCGTTTGAGTCCTGATGCATTTAAAAGGATGAATAGCTTGAGATTTCTAAAATTATATATCCCCTCGGGTCAGAGTTCTGGTAAGATGGTCCTTCCTAAAGACCTTGAGCCATTTTCTGATAAACTAAGGTACTTTGAGTGGCATCAGTACCCTTTCGTTTCTCTTCCACCAAGGTTTTGTGCTAAGTTACTTGTTGAGATTCGCATGCCACACAGCCATGTCAAGAAACTTTGGCAGCAAAACCAGGAACTTGAGCATTTAGAAGGGATCGACTTAAGTGAATGCAAAGACTTAGAAGAGCTTCCAGATTTGTCTGAGGCTAAAAGACTCAGATGGGTGAATCTCTCTGGTTGTGTGAGTTTGACAATTCTTCCTTCATCTGTTTTTTCCTCCAACACTCTTGTTTCTTTGATCCTGGATAGGTGCACAAATTTGCAGTGTGTTAAGGCCAAAGGGCATCTGAATTCGCTGCAGTACATAAGTGTCAAAGGATGCTCAAATCTCACAGAATTTGCAGTGTCATCAGATTTGATCAAAAACTTGGATTTGAGTAACACAAAGATCCAAGAGCTGGACAAATCAATCGGGAAATTACAGAAGCTTGAATCCCTCAATCTAGAAGGATCAAGAGTTAAGCATCTTCCAAAGGAGCTATCAGCACTGAAATTGCTTAAGGAGTTGAAGCATTCATATAGTGGACTAGTAATTGACAAGAAGCAACTGCAAGACCTGTTTGACGGCTTACAATCTCTACAGATACTACATTTGAAGGATTGTAAGAACTCATTCGAATTCCCCGACAACATCATAGCCTTAACAAAATTGCGCGAGTTAAGGCTAGATGGAAGCTATGTGACCAGGTTGCCTGCAACCATCAAGTGTCTTCGAGAGTTGGAAATTTTCTCCGTAGATAATTGCATTTTTCTTGAGACACTGCCGGAGCCTCCATCTTCTATCAAGGAGTTCTCTGTCGTTAACTGTAGCTCATTGGAGTCTGTAGCACATCTAAACACTCTGGCAACAAAGATGGTGGGAAAGACAAAACGCATCTCATTCAATAATAGCTTGACATTGTCGTCTGGACACATATTGCATTCCATCTTGGAAAGCATCCATTCAACAATGATGAGTGCTGTATCTAGCAATGTCATGGTAAGAAGCTATGGAACCGATGTCCATAGCTACAATTACAACAGTGTGGAGGTTTCTTTGCCAGGAGACACAATCCCGGAGCAATTTGCATATAAAACTGAGAAATCCTCCTCCATAACAATTGAACTCCCTGACTCTCTTTCCAACTCTATTGGCTTTATCTATTCAGTGGTTCTTTCACCACGTCATGGATTGAAGAAGCACGGTGCCAAAATCCGATGCGAGTACAACTTTGCAGGAGGCAAGAATTCTTCTTGGGAGGACATAACCATAAGTGAGCTGAAATCAGATCATTTATTTATATGGTATGATCCATTCCACACTGACAAAATTCTTGGACAAGATAAGCCTAGTTTCCATCTTGAGTTCAGTGTTGTTGCAACTGACACCGGGGAAGTTGATGACTCCATCATTGTTAAGGAGTGTGGTGTTCAGATCATAAATGAATCAGAATGGCAGATATTCTCACAGGAATTTGATAAGATGAAAAAGGATATGGAGGAGGAATCATCAACGCAGAAGTTGCATCCACCACATGTCCAGACTCCACCTCATGACTTGAAGAAAGAAAGATTTGATGAGAAGCAGAACAAAGACACTGAAAACCCGATTTCAAAGCAACAAACAGAAAAGAAGACGGAACCTGCTACCAATGAAAACAAGACTAGCGGTGGAAAAAGTCATGAGGAGAACAAGATAATCAAAGGCAAGGGAAATGAACCACCACCAACTGAATCTGATGTTGGATTGCCTCTATCCGTTGATTCAGTTAATAACAATGTGTCCGTGGACATTTCAAATGAAAATTATTATGATCAGTCAAATGCTAAGGAAGAGGTTAAACATTTGGAAGAAAAACAAGAAGAAGTTCATCATCGCATCCATGATATGACTGCTGATGAACCACACATAGAAAAGCAAAAGGAGGCAATGGATCTTGAAACATCTGAAGGTCAAGAGCTACGCAAAGCAAAAAAGATTGTGCTTGCCCACCTCATTAATTCCAGCATACCTTCACACGGCATGAAGGTGGCTCCTAAGATGACTAGGAAAGAACTCCGCCGGCACTTGAAGAAGGTAGACAAGAAGGCAAAAGTTGATGAAGGCGACCCTGCAAGAGCAACTCAAGCTGGAAATTTAGCCATGGAAACTTATCATCATTCTTCCAGTTCGAAGATTAAAGGCAAAAGAGTAGAAGATATCCATTTGAACCAGGTTTCAACTCAAAATACTTCTACTTCCATTGCACAAATGCATGATAAAATCACCATTCCCTCCCTGGATGATCCTCAAGTGGCTCTAGAGTTGCTAAAACACTTCGATGCATCAGCTATACGCCTCCAAATAACAGAGTTTGTGGACAATCATGTTCTATATCCATATGATCATTCCATTACAAAAGACCTTGATGTTTCCGCACTTTGTTGTTGGCTTCAAGTTCAAGCGCTTCGTTCAGTGAGCGTTGCAAGATACGCTGAGATGAAGTTCGAAGCGGCCAAACGAGAAAGAGAGGAAGAATTAAGACTTGCAAGAGAAGAAAATGCAAAGGTTGAAGAAGCTTTGAAAAAAATGAAGGAGAAGGTTTCACGTGTTGAATCATTGGAGAAAAGAGTTGAGGATTTGAACTCTGAGGTGGCTTGCTGGAGAAGTAAATATGAAGAAACTCAAAAGTCACTCAACGAAGCCCAAAAGAAACTTGAAGATGAGCTTCGGGAATGGCAAGAGAAAGAATCCTTTTGGAAAACAAGAGAGATTGAGGTGATTAAGGAGGAGGCGGTAAGTCAGTGGGTTAAGTCATTTGAACATTGCATGTTGCAGGTTTTGACTTTGTATCCGGACATTGATTTAAGTAGGATAGGAGCTTTCAAGGAGATTCGGAATGGGGAGATAGTATCCCCCTCTGATTCCGAGGAGACTGAGAGTGAAGAAGACACTACGGCTATCTCTGGGGAACTTTGA 4575 0.4098 MDRLLKGGEEIWPTLEKAIENSLMSIVVFSENFATSKWCLEELVKIVQWRDHHGQVVIPVFYRTEPRDVRRQRGSYEKAFAKYEREEKESNREKISKWRQALKEAANISGWHSTHYEDDDELARKVVKDVLEMRILKHPNIPTGLVGIKQIRKSIKFKMKQHGVIGIWGMPGIGKTTIAKMLFAKFFPHYDYVCYAENAKEYTPQRLLSELLREQISTDDAGFVNTLRRLSSRKVLIVLDNVKEFDQTLLEAVCEAYKSHSRDSKLIITTTHKHLLEKRVEWILEVKQWSDSKAIELLSLKAFEESTPPKPFESLVNKVVKYAGGIPLALNVLGSYLRHKSIQFWESTLKKLQRHPHQDIHIAFRKIYDELDEPNKEIFLDIAFFFHGEKKDLVTSILEACNFSAINGVEVLHDKAMITTIPFKETIDMHGLLREMAYEVVHEENSKDPRKRSRLRDTEDICDVLKENKKSLDAIEGIILDLSQIKDLRLSPDAFKRMNSLRFLKLYIPSGQSSGKMVLPKDLEPFSDKLRYFEWHQYPFVSLPPRFCAKLLVEIRMPHSHVKKLWQQNQELEHLEGIDLSECKDLEELPDLSEAKRLRWVNLSGCVSLTILPSSVFSSNTLVSLILDRCTNLQCVKAKGHLNSLQYISVKGCSNLTEFAVSSDLIKNLDLSNTKIQELDKSIGKLQKLESLNLEGSRVKHLPKELSALKLLKELKHSYSGLVIDKKQLQDLFDGLQSLQILHLKDCKNSFEFPDNIIALTKLRELRLDGSYVTRLPATIKCLRELEIFSVDNCIFLETLPEPPSSIKEFSVVNCSSLESVAHLNTLATKMVGKTKRISFNNSLTLSSGHILHSILESIHSTMMSAVSSNVMVRSYGTDVHSYNYNSVEVSLPGDTIPEQFAYKTEKSSSITIELPDSLSNSIGFIYSVVLSPRHGLKKHGAKIRCEYNFAGGKNSSWEDITISELKSDHLFIWYDPFHTDKILGQDKPSFHLEFSVVATDTGEVDDSIIVKECGVQIINESEWQIFSQEFDKMKKDMEEESSTQKLHPPHVQTPPHDLKKERFDEKQNKDTENPISKQQTEKKTEPATNENKTSGGKSHEENKIIKGKGNEPPPTESDVGLPLSVDSVNNNVSVDISNENYYDQSNAKEEVKHLEEKQEEVHHRIHDMTADEPHIEKQKEAMDLETSEGQELRKAKKIVLAHLINSSIPSHGMKVAPKMTRKELRRHLKKVDKKAKVDEGDPARATQAGNLAMETYHHSSSSKIKGKRVEDIHLNQVSTQNTSTSIAQMHDKITIPSLDDPQVALELLKHFDASAIRLQITEFVDNHVLYPYDHSITKDLDVSALCCWLQVQALRSVSVARYAEMKFEAAKREREEELRLAREENAKVEEALKKMKEKVSRVESLEKRVEDLNSEVACWRSKYEETQKSLNEAQKKLEDELREWQEKESFWKTREIEVIKEEAVSQWVKSFEHCMLQVLTLYPDIDLSRIGAFKEIRNGEIVSPSDSEETESEEDTTAISGEL 1524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60578g00004 1524 Gene3D - 1 135 IPR035897 -
Stsc60578g00004 1524 PRINTS Disease resistance protein signature 229 243 - -
Stsc60578g00004 1524 PRINTS Disease resistance protein signature 164 179 - -
Stsc60578g00004 1524 PRINTS Disease resistance protein signature 323 337 - -
Stsc60578g00004 1524 PRINTS Disease resistance protein signature 570 586 - -
Stsc60578g00004 1524 Gene3D - 136 283 IPR027417 -
Stsc60578g00004 1524 SMART till_3 1 108 IPR000157 GO:0007165
Stsc60578g00004 1524 MobiDBLite consensus disorder prediction 1502 1524 - -
Stsc60578g00004 1524 Gene3D - 289 372 IPR042197 -
Stsc60578g00004 1524 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 5 662 IPR044974 GO:0006952
Stsc60578g00004 1524 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 111 IPR035897 -
Stsc60578g00004 1524 ProSiteProfiles TIR domain profile. 1 134 IPR000157 GO:0007165
Stsc60578g00004 1524 MobiDBLite consensus disorder prediction 1507 1524 - -
Stsc60578g00004 1524 Pfam C-JID domain 892 1023 IPR045344 -
Stsc60578g00004 1524 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 135 382 IPR027417 -
Stsc60578g00004 1524 Pfam TIR domain 3 133 IPR000157 GO:0007165
Stsc60578g00004 1524 SUPERFAMILY "Winged helix" DNA-binding domain 364 466 IPR036390 -
Stsc60578g00004 1524 Coils Coil 1145 1165 - -
Stsc60578g00004 1524 MobiDBLite consensus disorder prediction 1231 1266 - -
Stsc60578g00004 1524 Pfam NB-ARC domain 158 372 IPR002182 GO:0043531
Stsc60578g00004 1524 Coils Coil 1368 1455 - -
Stsc60578g00004 1524 Gene3D Ribonuclease Inhibitor 664 869 IPR032675 -
Stsc60578g00004 1524 Gene3D Ribonuclease Inhibitor 433 663 IPR032675 -
Stsc60578g00004 1524 SUPERFAMILY L domain-like 480 821 - -
Stsc60578g00004 1524 MobiDBLite consensus disorder prediction 1053 1108 - -
Stsc60578g00004 1524 MobiDBLite consensus disorder prediction 1035 1123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60578g00004 Stsc-Chr60578 7293 13285 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60578g00004 35 793 WRKY Transcription Factor Family AT4G12020 29.719 3.60e-74 272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60578g00004 - - aip:110266592 2255.71