Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60577g00018 ATGGGTGAGGAGTTTGAAGCAGCGATTTGTGGTGATAACTATTGGTGGAACTCATCATCAACACGAAGCTTGTTCCCTTTCATGGGTGGATCCATGACTTGTTCCGTCGCTGCTGCTGCTAATGATTCTGCTTCCTGCTGGCAAGTTTCTGATTTCAACAAGGGACCAACAACAAGGTCTTCTTCTCATGAAGAAGAACAAGAACAAGATACTAACAACAAGTGTGGGAGCATCTTCATGGATTCCACCTTACAAATGATGGCTTATGGCCTCTCATCTAATTCACCATCATTCACTTGTTGGAATAATAATAATCCCTCTCTTTTTGGTTGTAATGGAAGATCAGAGAACAACTTCCAATCTTCTGTTATGCTTCAAGAAGAAACAGGATTAGATTGTTCTGTGAGCTGTGGATTCCAAATAGGATCATCATCTTCTTCATCAGCTAATACTACTTATGGTTACCCTTCTTCAACCATGATTCATGAAGGAGGGCTATTTGACCCAACTGATTCATTATCATCATCACTTTTCACACCAGCAGCAGCAATCCCTCATGAACTCTCACCAACATATTCTACTGTGTCTTCTCTTATGAAGCCCTCATCATCATCATCAATGGAACCAAATCAGCAGCAGCAGCAGATTAATAATAATGGATTGCAATTCTCAAACAATACTACTACTACTCCTTTCTGGAATGCGTCTACTTCGCCTCATCATGACATAATAACATCTGCTGCTGTCTTTTCTTCATCTTCATCACAACAACCACACCAATATCAAACACCACCAAATGCTCCACTCAACAAGCTGAAGAGAGAAGAATCTCCGGAGAAGGCATCATCAGGAGGTGGGAGCAAAAGTGGTTCTGAACGAGCCTTCAAGAGGACAAGAATTGAAACGCCATCTCCATTACCAACTTTTAAGGTTCGGAAAGAGAAGCTAGGGGACCGGATCACTGCTCTTCAGCAATTGGTATCACCTTTCGGAAAGACGGACACTGCATCTGTTCTCCACGAAGCCATTGAGTACATCAAGTTCCTTCACGATCAAGTCAATGTTTTAACCACTCCATACATGAAAAATGGAGCTCCAATTCAACATCAACAGGTATGTGATAATGGAAAGGATTCAGGTGCAAAACAAGATTTGAGAATCCGAGGGCTTTGTTTGGTACCAGTTGCGAGCACATTTCCGATGGCTACCGAAACCACTGCCGATTTTTGGACGCCTACATTCGGAGGCGCACTGATCGGCAGTGGTAGATAG 1272 0.4269 MGEEFEAAICGDNYWWNSSSTRSLFPFMGGSMTCSVAAAANDSASCWQVSDFNKGPTTRSSSHEEEQEQDTNNKCGSIFMDSTLQMMAYGLSSNSPSFTCWNNNNPSLFGCNGRSENNFQSSVMLQEETGLDCSVSCGFQIGSSSSSSANTTYGYPSSTMIHEGGLFDPTDSLSSSLFTPAAAIPHELSPTYSTVSSLMKPSSSSSMEPNQQQQQINNNGLQFSNNTTTTPFWNASTSPHHDIITSAAVFSSSSSQQPHQYQTPPNAPLNKLKREESPEKASSGGGSKSGSERAFKRTRIETPSPLPTFKVRKEKLGDRITALQQLVSPFGKTDTASVLHEAIEYIKFLHDQVNVLTTPYMKNGAPIQHQQVCDNGKDSGAKQDLRIRGLCLVPVASTFPMATETTADFWTPTFGGALIGSGR 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60577g00018 423 MobiDBLite consensus disorder prediction 193 215 - -
Stsc60577g00018 423 CDD bHLH_AtbHLH_like 306 356 IPR045239 -
Stsc60577g00018 423 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 130 399 - -
Stsc60577g00018 423 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 310 367 IPR036638 GO:0046983
Stsc60577g00018 423 Gene3D - 310 370 IPR036638 GO:0046983
Stsc60577g00018 423 MobiDBLite consensus disorder prediction 250 300 - -
Stsc60577g00018 423 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 300 349 IPR011598 GO:0046983
Stsc60577g00018 423 MobiDBLite consensus disorder prediction 250 267 - -
Stsc60577g00018 423 FunFam Transcription factor bHLH123 family 310 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60577g00018 Stsc-Chr60577 72578 75256 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60577g00018 1 416 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G61660 37.241 3.24e-60 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60577g00018 - - adu:107468661 413.305