Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60577g00016 ATGGCAGGTGAGCTACCAGAACACTTCAAGTGTCCGATTTCACTGGAAATAATGAGGGACCCAGTCATACTCTCCTCAGGCCACACCTTCGACCGATCCTCCATACAACGCTGGCTAGACGCTGGACACCGCACTTGCCCAATTACCAAACTACCCCTACCCGATCAACCCATCCTCATCCCCAACCACGCCCTCCGCAGCCTCATTTCCAACTTTACCCCTCTCACTCCAACTCCAATTCCCAATCCCACACCCACCCGCTCCCAACCCCAAACCCTAATCTCTACTCTCACCTCCCAAGCTTCCTCTTCTTCCTCCAAGCTCGACTCGCTCCACCAACTCACTCGACTCGCCAAGCGTGACTCACTCTTCCGCCGCCGTCTCTCCGAATCCGGAATCGTCCCGCCTCTACTCTCCTGTGTCGACTCCCACGACCACGATTCCCTCCGCGACAACGCGCTCTCTCTGCTTCTCAATCTCAGCCTCGACGACCACAACAAGGTTGGACTCGTCGCCGAGGGAGTCGTTTCTCGCCTCGTCGCCATCATCTCCGGCACCGCTGCTGGAACTCCGTCTCCGGACTGCCGCGCCATCGCAGCCACCACACTCACAAGCCTCGCCGTTGTGGAGGTCAACAAGGCCACAATTGGCGCGTACCCTCACGCGATCGAGTCACTCGTGTCACTCGTAAGGGACGGAAAGGGGAGGGAGAAGAAGGAAGCCGCCACGGCGCTCTATGCTCTCTGCTCCTTCCCGGATAACAGGCGGAGGGCGGTGGAATGCGGCGCGGTGCCTGTTCTTCTCCGGAGCGTGGATTGCGGTTTGGAGAGGGCCGTTGAGGTTGTTGGGGTTCTTGCAAAGTGTAAGGAAGGGAGGGAGCAGATGGAGAGGTTCCATGGATGCGTTCAGATTCTGAGCCGAGTTCTGAGGAATGGAAGCTCAAGAGGGGTTCAGTATGCTCTCTTGGCTCTTAACTCGTTGTGTTGTGGCAGTGAAGTTGCTTCCATGGATGCCATCAGAGAAGGCCTCTTGGAAACGTGTCTTGCCTTTCTTGAAGATGATAACGAGAAAGTGAGGAGAAATGCTTCCGCTTTGCTCCAGAATCTGCGTGGCAACAATAGGATCAGCTGA 1131 0.5659 MAGELPEHFKCPISLEIMRDPVILSSGHTFDRSSIQRWLDAGHRTCPITKLPLPDQPILIPNHALRSLISNFTPLTPTPIPNPTPTRSQPQTLISTLTSQASSSSSKLDSLHQLTRLAKRDSLFRRRLSESGIVPPLLSCVDSHDHDSLRDNALSLLLNLSLDDHNKVGLVAEGVVSRLVAIISGTAAGTPSPDCRAIAATTLTSLAVVEVNKATIGAYPHAIESLVSLVRDGKGREKKEAATALYALCSFPDNRRRAVECGAVPVLLRSVDCGLERAVEVVGVLAKCKEGREQMERFHGCVQILSRVLRNGSSRGVQYALLALNSLCCGSEVASMDAIREGLLETCLAFLEDDNEKVRRNASALLQNLRGNNRIS 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60577g00016 376 PANTHER U BOX DOMAIN-CONTAINING 6 367 - -
Stsc60577g00016 376 SUPERFAMILY RING/U-box 3 73 - -
Stsc60577g00016 376 FunFam RING-type E3 ubiquitin transferase 4 75 - -
Stsc60577g00016 376 CDD RING-Ubox_PUB 6 56 IPR045210 -
Stsc60577g00016 376 SMART arm_5 330 371 IPR000225 GO:0005515
Stsc60577g00016 376 SMART arm_5 121 162 IPR000225 GO:0005515
Stsc60577g00016 376 SMART arm_5 212 250 IPR000225 GO:0005515
Stsc60577g00016 376 SMART arm_5 288 329 IPR000225 GO:0005515
Stsc60577g00016 376 SMART arm_5 163 208 IPR000225 GO:0005515
Stsc60577g00016 376 ProSiteProfiles U-box domain profile. 4 79 IPR003613 GO:0004842|GO:0016567
Stsc60577g00016 376 Pfam U-box domain 6 72 IPR003613 GO:0004842|GO:0016567
Stsc60577g00016 376 SUPERFAMILY ARM repeat 91 369 IPR016024 -
Stsc60577g00016 376 Gene3D - 90 273 IPR011989 -
Stsc60577g00016 376 Gene3D - 274 375 IPR011989 -
Stsc60577g00016 376 Coils Coil 348 368 - -
Stsc60577g00016 376 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 76 IPR013083 -
Stsc60577g00016 376 SMART Ubox_2 8 72 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60577g00016 Stsc-Chr60577 64160 65975 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60577g00016 1 371 U-box Gene Family AT4G21350 59.200 2.77e-147 420
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60577g00016 - - pcin:129286672 488.034