Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60577g00015 ATGGAGAGAAGAAGAAGAACACACTTGAGCCTTTCATTTCTTGCCACTTGTTACTTCTTCTTCTTCTTCATTGCCATTTTTGCAGCACTTCTGGAAGCATATGATAGCATAAGTCCACCACAAACCATCACTGCCAACAAAACACTAGTCTCACCTTCCCAGAATTTTGAACTAGGTTTCTTCAATCTTGGTAGCAGCAACTCCACTCGCAGATATCTTGGGATATGGTACAAAAATGTCCCTAAGAAAACTCTTATTTGGGTTGCAAATAGAAACGCTCCACTTTTTCATCATGATGATGGATCCTTAACATTCAGCAACGATGGCAAACTCATACTTCTCAGCCACAAAGGAAGTGTTGTTATATGGTCTTCAAATTCTTCTAGACCTGCAAGGAATCCAGTGTTACAGCTTCTAGACACTGGAAATCTTGTTCTGAAGGATATTGATGATGGAAGAAGCTCTGAGGAATATCTATGGCAGAGTTTTGATTATCCTTGTGACACATTGGTGCCAGGGATGAGACTTGGTTGGAGATTCAAAACCGGTTTGAACCGGCATTTGAGTTCTTGGAAGAGCTATGATGATCCTTCTAATGGAGATTACACCTACAGTGTTGACCCTCGCGGAATTCCTCAGCTTTTTCTTTACAAGAGGAACAAGAAAATCTTTAGAAGTGGACCATGGTATGGACAACAATTCAAAGGTGATCCAGTTCTCAGTTCAAACCCAGTTTTCAAACCAGTATTTGTTTTTGATTCTGATGAAGTCTCTTACTCATATGAGGCTAAGGACAACATGATCTCGAGATTCGTCCTCACGCCATCAGGTTCCATTCTCCATTTCTCCTGGAATGATCACAAGTCAAGTTGGATTTCTGAGTTCTCAGTCCAAGGGGACCATTGTGATGATTATGCTCTTTGTGGTGCTTATGGCAGTTGCAGCATTGCTAAGAGCTCTTCCCCTAGTTGCAAGTGTTTGAAGGGTTTTGAGCCTAGAAGGAAAGCTCAAGATTGGTCAAGTGGATGTGTGAGGGAGGATTCAAAGGGTTGCAGAAGTGGAGGAGACACATTTGAGAAGCTTACAGGGTTGAAACTACCAGATTCTGCAGAGTTTCATGCAGACTACAGCATTAGCATTAATCACTGTGAAGCAGAATGCTTGAAGAATTGTTCTTGTGTAGCTTATGCTAAACTAGATGTGAATGCAAGTGGCAAAGGATGTGTTACTTGGTTTGGAGATTTGTTTGATATCAGAGAGGTTCCTGTGTATGGTCAAGATCTCTATGTCAGAGTTTCAGCTTCACAACTAGATTCAAATGCTGCTAGAAACAAAAAGAAGAAGTTCATACTGCTTCCTGTGGCTGTATCCTTAGCTTCAACAATTATTGTTTTAGCATTGTGGTTCATAATTAAGATATGGCAAAGAACTGGAGCAATTGGAAAAGGGGAGCTTCAATTCAGTGATGGAAGAGGTAGTAGGAGTGAGAGGAATGAATATGAACTCCCATTATTTGAGATTGCCATCATTGAAGCTGCAACTATGAATTTCTCTGGGGAACTTCCATCAGGACAAGAAATAGCAGTGAAGAAACTCTTGGAGAGTTCTGGACAAGGTCTGGAGGAGTTTAAGAATGAAGTGATTTTGATCTCCCAACTTCAGCATCGAAATCTTGTAAAGCTTCTTGGTTGCTGCATTCATGGAGAAAACAAAATGTTGGTCTATGAATACATGCCAAACAAAAGCTTGGACTCATTATTATTTGATGAAACCAAGCGTTGTATCCTCAATTGGCAAAAGAGGCTGGACATTATCATTGGTATTGCAAGAGGGCTTCTCTACCTTCATAGAGATTCAAGGCTAAGAATAGTCCATAGAGATCTAAAAGCAAGCAATGTTCTTCTAGACACTGAAATGAATCCAAAGATTTCCGATTTCGGAATGGCTAGAATGTTTGGTGGAGATCAAACTGAAGCAATGACCAAGAGAGTGGTTGGAACCTATGGATATATGTCACCAGAGTATGCAATAGATGGTCAATTCTCTTTCAAATCAGATGTATTCAGCTTTGGTGTTCTACTGCTAGAGATATTGAGTGGCAAGAAAAACAAAGGATTCTTGCACCCAGATCACAAACTCAATCTTCTAGGCCATGCATGGAAGCTTTGGAATGAAGGTAAAGCATTGGAGATGATGGATGGTTTGCTTGAGAATGAGTTTCCTACGAATGAAGCTGTAAGGTGTATACAAGTGGGACTGTCATGTGTTCAACACCACCCAGAAGACAGGCCAACAATGTCACAAGTTCTTGTGATGTTGGATAGTGAGAGTGCAGGGCTGCCACAACCTGGAAGACCAGGATTATATTCAGAGAGATTTTTCTCAGAGACAGATTCAACTTCACTTGCTAGACTCAACACTAGTTCTAATCACATCACTGTCACCTTAATAGAGGCTCGTTAA 2463 0.4076 MERRRRTHLSLSFLATCYFFFFFIAIFAALLEAYDSISPPQTITANKTLVSPSQNFELGFFNLGSSNSTRRYLGIWYKNVPKKTLIWVANRNAPLFHHDDGSLTFSNDGKLILLSHKGSVVIWSSNSSRPARNPVLQLLDTGNLVLKDIDDGRSSEEYLWQSFDYPCDTLVPGMRLGWRFKTGLNRHLSSWKSYDDPSNGDYTYSVDPRGIPQLFLYKRNKKIFRSGPWYGQQFKGDPVLSSNPVFKPVFVFDSDEVSYSYEAKDNMISRFVLTPSGSILHFSWNDHKSSWISEFSVQGDHCDDYALCGAYGSCSIAKSSSPSCKCLKGFEPRRKAQDWSSGCVREDSKGCRSGGDTFEKLTGLKLPDSAEFHADYSISINHCEAECLKNCSCVAYAKLDVNASGKGCVTWFGDLFDIREVPVYGQDLYVRVSASQLDSNAARNKKKKFILLPVAVSLASTIIVLALWFIIKIWQRTGAIGKGELQFSDGRGSRSERNEYELPLFEIAIIEAATMNFSGELPSGQEIAVKKLLESSGQGLEEFKNEVILISQLQHRNLVKLLGCCIHGENKMLVYEYMPNKSLDSLLFDETKRCILNWQKRLDIIIGIARGLLYLHRDSRLRIVHRDLKASNVLLDTEMNPKISDFGMARMFGGDQTEAMTKRVVGTYGYMSPEYAIDGQFSFKSDVFSFGVLLLEILSGKKNKGFLHPDHKLNLLGHAWKLWNEGKALEMMDGLLENEFPTNEAVRCIQVGLSCVQHHPEDRPTMSQVLVMLDSESAGLPQPGRPGLYSERFFSETDSTSLARLNTSSNHITVTLIEAR 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60577g00015 820 Pfam PAN-like domain 351 418 IPR003609 -
Stsc60577g00015 820 SMART serkin_6 505 773 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60577g00015 820 SUPERFAMILY Protein kinase-like (PK-like) 522 783 IPR011009 -
Stsc60577g00015 820 ProSitePatterns Serine/Threonine protein kinases active-site signature. 623 635 IPR008271 GO:0004672|GO:0006468
Stsc60577g00015 820 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 30 163 - -
Stsc60577g00015 820 CDD PAN_AP_plant 351 433 - -
Stsc60577g00015 820 Pfam D-mannose binding lectin 84 192 IPR001480 -
Stsc60577g00015 820 CDD B_lectin 41 166 IPR001480 -
Stsc60577g00015 820 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 20 764 - -
Stsc60577g00015 820 FunFam Uncharacterized protein 510 577 - -
Stsc60577g00015 820 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 578 781 - -
Stsc60577g00015 820 Gene3D Transferase(Phosphotransferase) domain 1 578 779 - -
Stsc60577g00015 820 ProSiteProfiles EGF-like domain profile. 298 336 IPR000742 -
Stsc60577g00015 820 ProSiteProfiles Bulb-type lectin domain profile. 34 159 IPR001480 -
Stsc60577g00015 820 Gene3D Phosphorylase Kinase; domain 1 493 577 - -
Stsc60577g00015 820 Pfam S-locus glycoprotein domain 224 333 IPR000858 GO:0048544
Stsc60577g00015 820 SUPERFAMILY alpha-D-mannose-specific plant lectins 85 197 IPR036426 -
Stsc60577g00015 820 ProSiteProfiles PAN/Apple domain profile. 351 433 IPR003609 -
Stsc60577g00015 820 SMART ntp_6 353 432 IPR003609 -
Stsc60577g00015 820 SMART blect_4 40 166 IPR001480 -
Stsc60577g00015 820 Pfam Protein tyrosine and serine/threonine kinase 523 771 IPR001245 GO:0004672|GO:0006468
Stsc60577g00015 820 PIRSF SRK 6 820 IPR024171 GO:0004674
Stsc60577g00015 820 ProSiteProfiles Protein kinase domain profile. 474 780 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60577g00015 820 Gene3D - 30 163 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60577g00015 Stsc-Chr60577 56416 59752 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60577g00015 432 788 Receptor kinase-like Gene Family AT4G05200 49.202 8.78e-115 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc60577g00015 PK_Tyr_Ser-Thr 8.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60577g00015 - - gmx:100804024 1208.74