Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60577g00013 ATGACAATCTTCTTTTCTCGTCACCTCCTCATTCTTACTACCTTCTTCTTCATCACTCCTTCAACCTCTTCCGATACTTTAACTGCAACACAAATCCTCACAACCAATCAAACTCTAATCTCACAAAACCAAACCTTCGTTCTAGGCTTCTTCAGACGCTCCATCACCAACTATTACCTCGGAATATGGTACAACAACATCACTCCTCAAACAATAGTTTGGGTTGCAAACAGAGACAACCCCATTCACAACTCCTCAGGCTATCTAAAGCTTGGAGACCATGGAAACTTTCTCCTCCTCAATTCATCCGGCAACCTCTCATGGTCCTCCAACGAAACCACCGCCAAGAATCCACTTCTCCAGCTCCTTGATACTGGTAACCTTGTTCTCAAAGATTCATCACACACCAACAATAACAACAACTACTTATGGCAGAGCTTCGATTATCCAACGGATACCGTGTTACCGGGGATGGAGATCGGTTGGAACTTTGACACAGGAATGGAAAAGCACTTAACATCATGGAAGATCACAGGTGAAGACCCTTCAAGCGGTGACTACACTATGAAGCTAGATTACCATGGTTTACCTGAGGGTTTCCTCAGGAGAGATAATCAAACTATAATATTCCGAGCTGGTCCTTGGAATGGTGAGGGATTCAGTGGGATCACAGCCATGAAAGACAACACGGATGGTCTCAAGTTCAATTTCAATGATGATGAGCATGGTGTCATGTACTATTTCACTGTTACAAAACCTTCCTTGCTGTCAAGGATAATTCTCACTTCTGATGGTGAATTTGAACGCTACATGTGGTTACAAGCAAGTTGGAACAAGTTCTGGTACCAACCAGGGGATCAATGCGATTACTATGGAGTTTGTGGTCCCTATGGAGTGTGTGACAATAATGCTTCTCCAAACATGAAGCTGCCGGAGACGGCCAATGTGTTTGTGAATAAAAGTATGACACTTGATGAATGTGAGAGTTTGTGCAAGAGGAACTGTTCATGCACTGCATATGCAAACATTGATATCACAAATGGAGGAACTGGTTGTGTTATGTGGGTTGGTCAACTCTTTGACATGAGTGTCTACCCTTCCAATGGCCAAGATCTCTATGTCAGATTGTCAGCTTCTGATATAGGAACTAGCAAGAATCATAGAGTAATTGAGGCTATAGGCATTACACTTGGTGCACTTGTTATAGTTTTGGGATTGGTTGCTATTTGTTACTTGAGGAACAAGAGACAGCAAAGATCTAGAGGTCATGATTCGTTAATGAATGAGATATACTCAGGAGGTGTTGAAAGGAACATGGATGATCTAGAGTTGCCAATGTTTGATTTTGATACCTTAACAATGGCTACAAACAATTTCTCTCAAGATAATAAACTTGGAGAAGGTGGCTTCGGTAGTGTTTATAGGGGCAGATTAATTGAAGGCCGAGAAATTGCTGTGAAGAGGTTATCAGAGGACTCTAGACAAGGAATTCAAGAATTTAAGAATGAAGTCAAGTTAATTATCAAGCTTCAACACCGAAATCTTGTTCGCTTGCTTGGTTGCTGCATTGAGAAGGATGAGAAGATGTTGGTGTATGAGTATATGGAAAACAGAGGCCTTGATTCCATTTTGTTTGACAAATCAAAAAGAGCCTTACTTAATTGGGAGAGACGCTTCAATATTATATATGGAATAGGCAGAGGACTTGTCTATTTACATCAAGATTCAAGATTTCGAATTATTCATAGAGATCTCAAGACAAGTAATATACTACTAGATGGTGACATGAATCCAAAGATATCGGATTTTGGTTTGGCTAGAATTTTTGACAAAGATGAAATACAAACAAAAACATTAAGAATTGTTGGAACATATGGTTATATGGCTCCCGAATATGCTATGTACGGAAAATTCTCGATAAAATCCGATGTTTTTAGCTTTGGAGTTATGATATTGGAGATCATAACTGGAAAGAAGAACAGATGGTTTTCCAATGATAAAGATGAAGAATCGAATCTTTTGGAAAATGTATGGAGGCATTGGCATAAAGGAACTGTAATGACACTGGTTGATCCATCCATTAGCAATTCATGTACAGAATCTGAAGTTGTAAGATGTATACATATTGGACTGTTATGTATCCAAGAACGTGCAGAAGATAGACCAACAATGTCTTCAGTAGTCTTAATGTTGAGTAATGAGGCTCCATCAATGTCAAATCCTAAAAGTCCTGGATTTTCTGCAAGAAAAACCCATTCAGATATGGATTCATCTTCAAGCAGGCAAGACGAAACATGGAGTGTGAATGAAGTCACAATCACAGTGTTAGATGCTAGATAG 2340 0.3962 MTIFFSRHLLILTTFFFITPSTSSDTLTATQILTTNQTLISQNQTFVLGFFRRSITNYYLGIWYNNITPQTIVWVANRDNPIHNSSGYLKLGDHGNFLLLNSSGNLSWSSNETTAKNPLLQLLDTGNLVLKDSSHTNNNNNYLWQSFDYPTDTVLPGMEIGWNFDTGMEKHLTSWKITGEDPSSGDYTMKLDYHGLPEGFLRRDNQTIIFRAGPWNGEGFSGITAMKDNTDGLKFNFNDDEHGVMYYFTVTKPSLLSRIILTSDGEFERYMWLQASWNKFWYQPGDQCDYYGVCGPYGVCDNNASPNMKLPETANVFVNKSMTLDECESLCKRNCSCTAYANIDITNGGTGCVMWVGQLFDMSVYPSNGQDLYVRLSASDIGTSKNHRVIEAIGITLGALVIVLGLVAICYLRNKRQQRSRGHDSLMNEIYSGGVERNMDDLELPMFDFDTLTMATNNFSQDNKLGEGGFGSVYRGRLIEGREIAVKRLSEDSRQGIQEFKNEVKLIIKLQHRNLVRLLGCCIEKDEKMLVYEYMENRGLDSILFDKSKRALLNWERRFNIIYGIGRGLVYLHQDSRFRIIHRDLKTSNILLDGDMNPKISDFGLARIFDKDEIQTKTLRIVGTYGYMAPEYAMYGKFSIKSDVFSFGVMILEIITGKKNRWFSNDKDEESNLLENVWRHWHKGTVMTLVDPSISNSCTESEVVRCIHIGLLCIQERAEDRPTMSSVVLMLSNEAPSMSNPKSPGFSARKTHSDMDSSSSRQDETWSVNEVTITVLDAR 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60577g00013 779 SMART blect_4 30 150 IPR001480 -
Stsc60577g00013 779 ProSiteProfiles PAN/Apple domain profile. 300 377 IPR003609 -
Stsc60577g00013 779 CDD PAN_AP_plant 300 377 - -
Stsc60577g00013 779 CDD STKc_IRAK 465 731 - -
Stsc60577g00013 779 Gene3D - 19 147 IPR036426 -
Stsc60577g00013 779 ProSitePatterns Protein kinases ATP-binding region signature. 465 487 IPR017441 GO:0005524
Stsc60577g00013 779 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 20 147 - -
Stsc60577g00013 779 Gene3D Phosphorylase Kinase; domain 1 435 534 - -
Stsc60577g00013 779 SUPERFAMILY alpha-D-mannose-specific plant lectins 57 216 IPR036426 -
Stsc60577g00013 779 MobiDBLite consensus disorder prediction 735 753 - -
Stsc60577g00013 779 SMART serkin_6 459 738 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60577g00013 779 CDD B_lectin 30 150 IPR001480 -
Stsc60577g00013 779 Pfam Domain of unknown function (DUF3403) 737 779 IPR021820 GO:0004674
Stsc60577g00013 779 Pfam D-mannose binding lectin 71 176 IPR001480 -
Stsc60577g00013 779 Pfam Protein tyrosine and serine/threonine kinase 461 729 IPR001245 GO:0004672|GO:0006468
Stsc60577g00013 779 ProSitePatterns Serine/Threonine protein kinases active-site signature. 580 592 IPR008271 GO:0004672|GO:0006468
Stsc60577g00013 779 SUPERFAMILY Protein kinase-like (PK-like) 444 758 IPR011009 -
Stsc60577g00013 779 Gene3D Transferase(Phosphotransferase) domain 1 535 745 - -
Stsc60577g00013 779 Gene3D Hepatocyte Growth Factor 301 375 - -
Stsc60577g00013 779 MobiDBLite consensus disorder prediction 735 765 - -
Stsc60577g00013 779 SMART ntp_6 297 376 IPR003609 -
Stsc60577g00013 779 Pfam S-locus glycoprotein domain 210 307 IPR000858 GO:0048544
Stsc60577g00013 779 Pfam PAN-like domain 306 362 IPR003609 -
Stsc60577g00013 779 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 10 722 - -
Stsc60577g00013 779 PIRSF SRK 1 307 IPR024171 GO:0004674
Stsc60577g00013 779 PIRSF SRK 303 779 IPR024171 GO:0004674
Stsc60577g00013 779 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 424 534 - -
Stsc60577g00013 779 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 535 739 - -
Stsc60577g00013 779 ProSiteProfiles Protein kinase domain profile. 459 738 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60577g00013 779 ProSiteProfiles Bulb-type lectin domain profile. 24 143 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60577g00013 Stsc-Chr60577 41781 44805 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60577g00013 406 779 Receptor kinase-like Gene Family AT4G23150 50.265 4.60e-126 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc60577g00013 PK_Tyr_Ser-Thr 2.7e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60577g00013 - - aip:107621495 1176