Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stsc60577g00012 | ATGACAATCTTCTTCATTCTTACTACCTTCTTCATCGCTTCATCAACCTCTTCCGACACATTAACCGGAACACAAACTCTCAGAACCAACCAAACACTATCATCACAAAACCAAACCTTCGTTCTAGGCTTCTTCAGAGGCTCCAACACCAACTACTACCTCGGAATATGGTACAACAACATCACCCCTCAAACAATAGTCTGGGTTGCAAACAGAGACAATCCTATTGACAACTCCTCAGGCTATCTCAAGATCGGAGACCATGGAAACTTTCTCCTCCTCAATTCATCCGGTAACACAACATGGTTCTCCTCCAACCAAACCATTGCCAAGAATCCACTTCTCCAGCTCCTTGATACTGGTAACCTTGTTCTCAAAGATTCATCACACACCACCAATAACAACAACTACTTATGGCAGAGCTTCGATTATCCAACGGATACCGTGTTACCGGGTATGGAGATCGGTTGGAACTTTGACGCAGGAATGGAAAAGCACTTAACATCATGGAAGATCACAGGTGAAGACCCTTCAAGCGGTGACTACACTATGAAGCTAGATTACCATGGTTTACCTGAGGCTTTCCTCAGGAGAGATAATCAAACTATAATATTCCGAACTGGTCCTTGGAATGGTGAGGGATTCAGTGGGATCACAGCCATGAAAGACAACACGGATGGTCTCAAGTTCAATTTCAAAGATGATGAGCATGGTGTCTTGTACTATTTCACTGTTACAAAACCTTCCTTGCTGTCAAGGATAATTCTCACTTCTGATGGCGAGTTTGAACGCTACATGTGGTTACAAGCAAGTTGGAACAAGTTCTGGTACCAACCAGGGGATCAATGTGATTACTATGGAGTTTGTGGTCCCTATGGAGTGTGTGACAATAATGCTTCTCCAGTTTGCACTTGTATGCAGGGGTTTAGCCCTAAGAACCAAGAAGCTTGGAACTTGAGAGATGGGTCTGATGGGTGTGTGAGGAACACAGGTTTAGATTGTCCTAATGACAAGTTCTTGCATCGTGAGAACATGAAGCTGCCGGAGACAACGAATGTGTTTGTGAATAAAAGTATGACACTTGATGAATGTGAGAGTTTGTGCAAGAGGAACTGTTCTTGCACTGCATATGCAAACACTGATATCAGAAATGGAGGAAGTGGTTGTGTTATGTGGGTTGATCAACTCTTTGACATGAGTGTCTTCTCTTCAGGTGGCCAAGATCTCTATGTCAGATTGGCAGCTTCTGATATAGGTTCTACTAGCTCCTACAACAATCATAGAGTAGTTCAAGCTATTGGCATCACACTTAGTGCACTTGTATTAATTTTGGGAATGGCTGCAATTTGTTACATAAGGAAGAAGAGACAACAACAAAGATCTAGAGGTTTGGTCCACAGAAGTCATGATTCGTTAATGCATGAGGTGGTGGTGTCTTCTAGAAGACACTCAGTTGTTAATCGAAGGAACATGGATGATCTGGAGTTGCCAATGTTTGATTTTGATACCTTAATAATGGCTACAGACAATTTCTCTCAAGATAATAAACTTGGAGAAGGTGGATTCGGTAGTGTTTACAGGGGCAGATTGGCTGAAGGACAAGAAATTGCTGTGAAGAGATTATCAGAGGATTCTGGGCAAGGAATTGAAGAGTTTAAGAATGAAGTCAAGTTAATTGTCAAGCTACAACACCGAAATCTTGTTCGGTTGCTTGGTTGCTGCATTGAGAAGAATGAGAAGATGTTGGTGTATGAATATATGTCAAATAGAGGCCTTGACTCCATTTTGTTTGATAAATCAAAAAAATCTTTGCTCTACTGGGAAAGACGCTTCACAATTATATATGGGATAGCTAGAGGACTTCTTTATCTGCATCAAGATTCAAGATTTCGAATTATCCATAGAGATCTCAAAACAAGTAACATATTACTTGATAATGAAATGAATCCAAAGATATCAGACTTTGGAATGGCTAGAATTTTCGACAAAGATCAAACACAAGCTCAAACACTAAGAATTGTTGGAACATATGGTTATATGTCTCCCGAATATGCTATGGATGGAAACTTCTCAATAAAATCTGATGTTTTTAGTTTTGGAGTAATGGTATTGGAGATCATAACTGGGAAGAAGAATAGAGGGTTTTACAGTGATAATGAAGATTTGAATCTTCTGGGAAATGTATGGAGGCATTGGCATGAAGGAACTGCATTGTCACTGATTGATTCATGTATTGGAGATTCATACACAGAAGCTGAAGTTGTAAAATGCATACACATTGGACTTTTATGTGTTCAAGAACGTGTAGAAGATAGACCGACAATGTCTTCTGTTGTCTTAATGTTGAGCAGTGAAGCTCCATCAATGCCAAATCCTAAAAATCCAGGATTTATTGCAAGAAAAACTCTTCCGGAGACAGATTCATCTTCAAGTAAACGAGATGAAACATGGAGTGTGAATCAAGTTACCATCACAATGTTTGATGCTAGGTAG | 2493 | 0.4015 | MTIFFILTTFFIASSTSSDTLTGTQTLRTNQTLSSQNQTFVLGFFRGSNTNYYLGIWYNNITPQTIVWVANRDNPIDNSSGYLKIGDHGNFLLLNSSGNTTWFSSNQTIAKNPLLQLLDTGNLVLKDSSHTTNNNNYLWQSFDYPTDTVLPGMEIGWNFDAGMEKHLTSWKITGEDPSSGDYTMKLDYHGLPEAFLRRDNQTIIFRTGPWNGEGFSGITAMKDNTDGLKFNFKDDEHGVLYYFTVTKPSLLSRIILTSDGEFERYMWLQASWNKFWYQPGDQCDYYGVCGPYGVCDNNASPVCTCMQGFSPKNQEAWNLRDGSDGCVRNTGLDCPNDKFLHRENMKLPETTNVFVNKSMTLDECESLCKRNCSCTAYANTDIRNGGSGCVMWVDQLFDMSVFSSGGQDLYVRLAASDIGSTSSYNNHRVVQAIGITLSALVLILGMAAICYIRKKRQQQRSRGLVHRSHDSLMHEVVVSSRRHSVVNRRNMDDLELPMFDFDTLIMATDNFSQDNKLGEGGFGSVYRGRLAEGQEIAVKRLSEDSGQGIEEFKNEVKLIVKLQHRNLVRLLGCCIEKNEKMLVYEYMSNRGLDSILFDKSKKSLLYWERRFTIIYGIARGLLYLHQDSRFRIIHRDLKTSNILLDNEMNPKISDFGMARIFDKDQTQAQTLRIVGTYGYMSPEYAMDGNFSIKSDVFSFGVMVLEIITGKKNRGFYSDNEDLNLLGNVWRHWHEGTALSLIDSCIGDSYTEAEVVKCIHIGLLCVQERVEDRPTMSSVVLMLSSEAPSMPNPKNPGFIARKTLPETDSSSSKRDETWSVNQVTITMFDAR | 830 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stsc60577g00012 | 830 | Pfam | Receptor serine/threonine kinase | 466 | 501 | IPR022126 | GO:0004674 | |
| Stsc60577g00012 | 830 | Gene3D | Transferase(Phosphotransferase) domain 1 | 587 | 791 | - | - | |
| Stsc60577g00012 | 830 | CDD | PAN_AP_plant | 332 | 414 | - | - | |
| Stsc60577g00012 | 830 | CDD | B_lectin | 24 | 145 | IPR001480 | - | |
| Stsc60577g00012 | 830 | SMART | serkin_6 | 511 | 789 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Stsc60577g00012 | 830 | ProSiteProfiles | Protein kinase domain profile. | 511 | 789 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Stsc60577g00012 | 830 | Pfam | Protein tyrosine and serine/threonine kinase | 513 | 780 | IPR001245 | GO:0004672|GO:0006468 | |
| Stsc60577g00012 | 830 | FunFam | G-type lectin S-receptor-like serine/threonine-protein kinase | 587 | 790 | - | - | |
| Stsc60577g00012 | 830 | Pfam | S-locus glycoprotein domain | 205 | 313 | IPR000858 | GO:0048544 | |
| Stsc60577g00012 | 830 | FunFam | G-type lectin S-receptor-like serine/threonine-protein kinase | 14 | 142 | - | - | |
| Stsc60577g00012 | 830 | Gene3D | - | 13 | 142 | IPR036426 | - | |
| Stsc60577g00012 | 830 | PIRSF | SRK | 1 | 830 | IPR024171 | GO:0004674 | |
| Stsc60577g00012 | 830 | ProSiteProfiles | EGF-like domain profile. | 279 | 315 | IPR000742 | - | |
| Stsc60577g00012 | 830 | SUPERFAMILY | Protein kinase-like (PK-like) | 496 | 808 | IPR011009 | - | |
| Stsc60577g00012 | 830 | SUPERFAMILY | alpha-D-mannose-specific plant lectins | 51 | 211 | IPR036426 | - | |
| Stsc60577g00012 | 830 | FunFam | G-type lectin S-receptor-like serine/threonine-protein kinase | 475 | 586 | - | - | |
| Stsc60577g00012 | 830 | Pfam | D-mannose binding lectin | 65 | 171 | IPR001480 | - | |
| Stsc60577g00012 | 830 | Gene3D | Phosphorylase Kinase; domain 1 | 485 | 586 | - | - | |
| Stsc60577g00012 | 830 | SMART | blect_4 | 24 | 145 | IPR001480 | - | |
| Stsc60577g00012 | 830 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 632 | 644 | IPR008271 | GO:0004672|GO:0006468 | |
| Stsc60577g00012 | 830 | Gene3D | Hepatocyte Growth Factor | 334 | 411 | - | - | |
| Stsc60577g00012 | 830 | PANTHER | BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN | 4 | 773 | - | - | |
| Stsc60577g00012 | 830 | ProSiteProfiles | PAN/Apple domain profile. | 334 | 414 | IPR003609 | - | |
| Stsc60577g00012 | 830 | CDD | STKc_IRAK | 517 | 782 | - | - | |
| Stsc60577g00012 | 830 | Pfam | PAN-like domain | 335 | 399 | IPR003609 | - | |
| Stsc60577g00012 | 830 | ProSitePatterns | Protein kinases ATP-binding region signature. | 517 | 539 | IPR017441 | GO:0005524 | |
| Stsc60577g00012 | 830 | ProSiteProfiles | Bulb-type lectin domain profile. | 18 | 138 | IPR001480 | - | |
| Stsc60577g00012 | 830 | Pfam | Domain of unknown function (DUF3403) | 784 | 830 | IPR021820 | GO:0004674 | |
| Stsc60577g00012 | 830 | SMART | ntp_6 | 334 | 413 | IPR003609 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Stsc60577g00012 | Stsc-Chr60577 | 38069 | 41244 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Stsc60577g00012 | 499 | 830 | Receptor kinase-like Gene Family | AT4G11530 | 57.567 | 7.61e-129 | 399 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| PK | RLK-Pelle_DLSV | Stsc60577g00012 | PK_Tyr_Ser-Thr | 4.3e-49 | CL0016 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stsc60577g00012 | - | - | aip:107621495 | 1292.33 |