Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60577g00011 ATGGCTACGGTGTTTTACCGACACGTGTCTACTCTGTTTCTGCTCTGTTTCTTCTTCTTGCTCTGTTTCTGTGCTCTGTTTTCGTCTGCAGCTGCAAGGTCCAGTATCACAGCCACTCAGTTCATTAGGAACCGTGACAATCTCGTCTCAGATGGAAATAACTTCGAATTGGGTTTCTTCAGTTTCGATAATATCAACACTTACGTTGGGATTTGGTACTACAACATTCCTCAACCTTCCATCATATGGGTCGCTAACAGAGACAACCCCATCAAAGGTGATGACGGTGGAGCTATAACTATCCAGAAAGATGGAAACTTGGTCATCTTTGATGGACAAAAACGCAAGGTTTGGTCAACTAATGTCACAATTCCTGAGAATACTAACAAGACCACTGAAGCTGTTCTTGGTGATGATGGAAACCTCGTACTTTTGCTTACTGATTCTAAGAGAAAAGTATGGCAGAGCTTTGAGGATCCAAGCGACACGTATTTACCGGGTATGAAGGTTCCAATGAATCCTTCAAAGGGTGAGAATAAGAAAAACTATGTCTTTACTTCATGGAAATCAGCTAAAGATCCTTCACCTGGGAGCTACACAATGGGGCTTGATCCTGAGAGTTTGCTTCAGATTGTGGTTTGGGAAGGAGGGAGAAGAAGGTGGAGGAGTGGTTACTGGGATGGAGGGGTATTCACTGGTGTGGAAATGACAGGAAGCTTGCTTAATGGTTTCACCATTGATAAGAAAAGCTCTTCCTTTGTTTATAGCTTGCCTAATGATAGTGATAGTGATAAGGTAAGGTTTCAGATAAGTTGGGAAGGGTATGAGGAAGAGTTGAAGTGGGATGCATCTCAGAAACAATGGAATGTGTCACAGAAAGGGCCTTCTAATGATTGTGAGGCTTATAACAAGTGTGGTAGCTTCTCAGCTTGTGATATTACCTCAGGTTCACCTGTTTGTAAGTGCTTAAGAGGGTTTAGAGGTGGTGGTGGTGGTGGTAATGGTGGGTGCAAGAGGGTGACACCACTCAAGGCTGCTGCTGCTGGCTCCTCTGAGGTTGGTGTCAAAGAAGATGGATTCTCGAGGCATCGGTGCACGAGGCTGCCGGATTTCGCACAGCAAGGGGGTGAGGATTGTGAGAGCTTTTGCTTGAAGAATAGTTCTTGCACTGCTTATGCTGTTGTTGGTGGGATTGGGTGCATGGTTTGGTATGGAGATTTGGTTGATCTTCAAGATTTTGGAGAAAATGTTGGAGAAACACTTTTCGTTCGTTTATCTGCTTCTGATTTAGATAACAGTGGGAAAAAGAACAAGATTGTGATAGTAACAGCTATTGTAGCAGGATTAATCTCTATAGGGATTTTTGTATTTATAGTATGGATGTTCAAGGCAAAACTCAAAGTTTCATCAGCTTCATGTCACAAGAATAATGATGTGATACCAATGTATGATGCAAGCAAGAGTAAAGAGATGTCCACAGAATTTTCAGCTTCAGCTGATCTTAGTTTGGAGGGGAATGAGCTAAGTGGACCAGAACTTCCTCTTTTCAATTTTAGTTGCATTTCCATGGCCACAGACCATTTTTCTCAAGAAAATAAGCTTGGGGAAGGGGGTTTTGGTCCTGTTTACAAGGGAAAGCTTCCAAGTGGAGAACAAATTGCTGTCAAAAGGCTTTCAAGACATTCTGGGCAAGGCTTGGAGGAGTTCAAGAATGAAATGATGCTGATAGCTAAACTACAACACAGAAATTTGGTTAGACAAATGGGTTGTTCTATATATGGTGAAGAAAAATTGCTTGTATATGAATACATGCCTAACAAAAGCTTGGATCGCTTTTTATTTGATCCAGTCAAGCAAACACAGTTAGACTGGGCAAGACGCTACGATATCATTGAAGGCATTGCAAGAGGACTACTTTATCTACATCGAGATTCAAGACTAAGAATAATTCATCGAGACCTAAAAGCAAGTAACATTTTATTGGATGAACACATGAACCCAAAAATCTCGGATTTTGGACTGGCTAGAATATTTGGTGGAAACCAGAACGAAGCCAATACAACCAGAGTGGTTGGTACATACGGCTACATGGCTCCAGAATATGCAATGGAAGGATTATTTTCGATTAAATCTGATGTATATAGTTTTGGCGTATTACTTCTGGAGATCGTGAGTGGTCGAAGGAACACTAGCTTTCGTCACTCGGATGACACAAGTCTCATTGGATATGCATGGCATCTTTGGAATGAAGAGAGAGCAATGGAGCTTGTAGACCCTTGCATTCGTGAATCAAGTCCTAAGGACAAAGCTTTGAGGTGCATACACATAGGGATGTTGTGTGTGCAAGATTCAGCATCTCATAGACCAAACATGTCCAGCGTGGTGTTGATGCTTGAGAGTGAGACAACCTCTCTTCCATTACCTTCACAACCTTTGGTCACTTCCATGAGGAGATCTGAGGACAGAGAGTTTCATATGGAAGGCCTTGATGTCTCAAATGATTTAACTGTCACAATGGTGGTTGGAAGATAG 2532 0.421 MATVFYRHVSTLFLLCFFFLLCFCALFSSAAARSSITATQFIRNRDNLVSDGNNFELGFFSFDNINTYVGIWYYNIPQPSIIWVANRDNPIKGDDGGAITIQKDGNLVIFDGQKRKVWSTNVTIPENTNKTTEAVLGDDGNLVLLLTDSKRKVWQSFEDPSDTYLPGMKVPMNPSKGENKKNYVFTSWKSAKDPSPGSYTMGLDPESLLQIVVWEGGRRRWRSGYWDGGVFTGVEMTGSLLNGFTIDKKSSSFVYSLPNDSDSDKVRFQISWEGYEEELKWDASQKQWNVSQKGPSNDCEAYNKCGSFSACDITSGSPVCKCLRGFRGGGGGGNGGCKRVTPLKAAAAGSSEVGVKEDGFSRHRCTRLPDFAQQGGEDCESFCLKNSSCTAYAVVGGIGCMVWYGDLVDLQDFGENVGETLFVRLSASDLDNSGKKNKIVIVTAIVAGLISIGIFVFIVWMFKAKLKVSSASCHKNNDVIPMYDASKSKEMSTEFSASADLSLEGNELSGPELPLFNFSCISMATDHFSQENKLGEGGFGPVYKGKLPSGEQIAVKRLSRHSGQGLEEFKNEMMLIAKLQHRNLVRQMGCSIYGEEKLLVYEYMPNKSLDRFLFDPVKQTQLDWARRYDIIEGIARGLLYLHRDSRLRIIHRDLKASNILLDEHMNPKISDFGLARIFGGNQNEANTTRVVGTYGYMAPEYAMEGLFSIKSDVYSFGVLLLEIVSGRRNTSFRHSDDTSLIGYAWHLWNEERAMELVDPCIRESSPKDKALRCIHIGMLCVQDSASHRPNMSSVVLMLESETTSLPLPSQPLVTSMRRSEDREFHMEGLDVSNDLTVTMVVGR 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60577g00011 843 ProSiteProfiles PAN/Apple domain profile. 355 426 IPR003609 -
Stsc60577g00011 843 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 28 157 - -
Stsc60577g00011 843 CDD PAN_AP_plant 354 426 - -
Stsc60577g00011 843 ProSiteProfiles Bulb-type lectin domain profile. 33 157 IPR001480 -
Stsc60577g00011 843 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 604 806 - -
Stsc60577g00011 843 SMART blect_4 39 160 IPR001480 -
Stsc60577g00011 843 Pfam PAN-like domain 356 410 IPR003609 -
Stsc60577g00011 843 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 488 603 - -
Stsc60577g00011 843 CDD B_lectin 48 160 IPR001480 -
Stsc60577g00011 843 Gene3D Transferase(Phosphotransferase) domain 1 604 806 - -
Stsc60577g00011 843 CDD STKc_IRAK 534 799 - -
Stsc60577g00011 843 ProSitePatterns Serine/Threonine protein kinases active-site signature. 649 661 IPR008271 GO:0004672|GO:0006468
Stsc60577g00011 843 PIRSF SRK 6 843 IPR024171 GO:0004674
Stsc60577g00011 843 Pfam S-locus glycoprotein domain 221 327 IPR000858 GO:0048544
Stsc60577g00011 843 Pfam D-mannose binding lectin 81 189 IPR001480 -
Stsc60577g00011 843 Pfam Protein tyrosine and serine/threonine kinase 530 796 IPR001245 GO:0004672|GO:0006468
Stsc60577g00011 843 SUPERFAMILY Protein kinase-like (PK-like) 513 823 IPR011009 -
Stsc60577g00011 843 Gene3D Phosphorylase Kinase; domain 1 504 603 - -
Stsc60577g00011 843 SMART serkin_6 528 774 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60577g00011 843 Gene3D - 28 157 IPR036426 -
Stsc60577g00011 843 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 17 789 - -
Stsc60577g00011 843 SMART ntp_6 355 425 IPR003609 -
Stsc60577g00011 843 ProSiteProfiles Protein kinase domain profile. 528 813 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60577g00011 843 SUPERFAMILY alpha-D-mannose-specific plant lectins 67 226 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60577g00011 Stsc-Chr60577 33506 37175 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60577g00011 437 811 Receptor kinase-like Gene Family AT4G23230 53.191 5.76e-132 406
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc60577g00011 PK_Tyr_Ser-Thr 2.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60577g00011 - - gmx:102660295 1120.53