Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60577g00008 ATGGGGTCACTGGCTTTGCTACTAACACTTTTCTTTTGTCATGTTCCCACTTCCACTTCCTTGGACACCATCACCTCTTCATACATCCTTAAGCCCCCCCAAACTTTAAGCTCCAGCAATGGTTTCTTCCACCTTGGATTTTTCTCCCCTACTAACTCATCCACCTTTTCATACTACCTCGGTATCTGGTTCATGACCAAAGCCTCTGTCGTATGGGTTGCCAACAGAAACCAACCAATCAATGATTCTTCATCTTCTGGCCTGCTCAAGATATCAAAGGATGGAAACCTTGTTTTGATGAATTCAAATAGTGTGGTCCTTTGGTCAACAACTGCCTCCAATATTTCATCCAACACGGCAGCTACGCTTCTAGACACCGGCAACCTTGTGTTGCAAGAAAACTCCACAGGAAGGATCCTATGGCAGAGTTTCGAACACCCCACAAACGGTTACTTGCAGGGAATGGAACTCAACACTGCTAACATTAACGGGGAGAGAATAAAACTCACGTCCTGGAGAAGCCCTGAGGATCCATCCATTGGAGAATTTTCAGCTAGTCTTGAGCGCTTGAATATCCCGGAAGTAATGATATGGAGAGGGAGCCAACCATACTGGCGTAGCGGTCCATGGAATGGTGAAAAATTTCTGGGGATATCTGACATGAGAAGCAACTTTCTTTCAGGGTTTTACATAGGTGAAGAAAACACGGATAACGGAACTAGTAATTACTATCTTGCTTACAACCTCAGTAGCAATCCTGATACTGAATACTACTACATGTTGAGTGCTGATGGAAATCTATATGAGATGTATTGGGATCGTGATAAGAGCTGGCTTATCTCATGGAAATCTGAAACATCAGACTGTGATGTGTATGGAAAGTGTGGAGAGTTTGGAATTTGTGATCCTGCAAGCTCTCCAATTTGCAGCTGTTTGAGAGGGTATAAGCCAAGGAATCCTGAGGAATGGAATAAACACAACTGGAGCAGTGGTTGTGTTAGGAAGGAACCTTTGCAGTGTGAAAGTAAGAGTGTCACAAATAATAAAGAAGATGGATTTGTGAAGGTGCAGAATGCAAAGGTGCCAGCCTCTATCATGTGGTCTACTACCAATATTGGGAATGACTGCGGAGGTGATTGCTTGGGGAACTGCTCCTGCATAGCATATGCTTATGATGCTGGCACTGGTTGTATGTTTTGGTCTGCAAACCTAATTGACATCCAAAGCTTCTCATTGGGAGGAATCGATCTTTACATTCGACTTCCCAATTCAGAGCTTGGTGGAGACAAGAAAAAGGACACAGTGATCATTGCAGTTCCAGTCATAGTAGGAATGGCTATCATTCTCACCTGTGCTTATATCTTCTGGAAAAGGATTCAAATCAGAGAGAGAGTAAAAAACAAACCAAGGGTAAATGACAATGACCTGGGAAAAGTCCCAGAGCTTTTCCAATTTGAGTTTCAAAGACTTGTTGCTGCAACAAATAACTTCAATCAATCTAATAAGCTAGGAGAAGGAGGTTATGGACCAGTATATAAGGGAACATTATTGGAGGATGGACAGGAAATAGCAGTTAAAAGGCTTTCAAGATCATCCGGGCAAGGATATGAAGAATTTATGAATGAGATTATGGTTATATCAAAGCTTCAACATCGTAATCTTGTCAGACTTCTTGGATGTTGTATAGAAAGAGATGAGAAAATTTTGATCTATGAGTACATGCCAAATAAAAGTCTAGATGCATATATGTTTGATCAATCAACACGGATATTGAATTGGGAAGAACGTTTTAGTATAATCGAAGGAATAGCCCGGGGCTTGCTTTACCTTCACAGAGATTCTAGACTGAGAATTATACATAGAGATTTGAAAATGAGTAACATATTACTTGATGAAGAGCTAAATCCAAAAATTGCAGATTTTGGCCTGGCAAAGATTTTTACCCGGACTCAAGATATGGTCAATACTAGAAGGGTTGTTGGAACATAG 1989 0.4123 MGSLALLLTLFFCHVPTSTSLDTITSSYILKPPQTLSSSNGFFHLGFFSPTNSSTFSYYLGIWFMTKASVVWVANRNQPINDSSSSGLLKISKDGNLVLMNSNSVVLWSTTASNISSNTAATLLDTGNLVLQENSTGRILWQSFEHPTNGYLQGMELNTANINGERIKLTSWRSPEDPSIGEFSASLERLNIPEVMIWRGSQPYWRSGPWNGEKFLGISDMRSNFLSGFYIGEENTDNGTSNYYLAYNLSSNPDTEYYYMLSADGNLYEMYWDRDKSWLISWKSETSDCDVYGKCGEFGICDPASSPICSCLRGYKPRNPEEWNKHNWSSGCVRKEPLQCESKSVTNNKEDGFVKVQNAKVPASIMWSTTNIGNDCGGDCLGNCSCIAYAYDAGTGCMFWSANLIDIQSFSLGGIDLYIRLPNSELGGDKKKDTVIIAVPVIVGMAIILTCAYIFWKRIQIRERVKNKPRVNDNDLGKVPELFQFEFQRLVAATNNFNQSNKLGEGGYGPVYKGTLLEDGQEIAVKRLSRSSGQGYEEFMNEIMVISKLQHRNLVRLLGCCIERDEKILIYEYMPNKSLDAYMFDQSTRILNWEERFSIIEGIARGLLYLHRDSRLRIIHRDLKMSNILLDEELNPKIADFGLAKIFTRTQDMVNTRRVVGT 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60577g00008 662 Pfam PAN-like domain 347 407 IPR003609 -
Stsc60577g00008 662 ProSiteProfiles PAN/Apple domain profile. 340 422 IPR003609 -
Stsc60577g00008 662 CDD PAN_AP_plant 337 422 - -
Stsc60577g00008 662 CDD B_lectin 27 147 IPR001480 -
Stsc60577g00008 662 FunFam Receptor-like serine/threonine-protein kinase SD1-8 17 144 - -
Stsc60577g00008 662 Pfam D-mannose binding lectin 70 173 IPR001480 -
Stsc60577g00008 662 Pfam S-locus glycoprotein domain 205 318 IPR000858 GO:0048544
Stsc60577g00008 662 SMART ntp_6 348 421 IPR003609 -
Stsc60577g00008 662 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 8 652 - -
Stsc60577g00008 662 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 574 662 - -
Stsc60577g00008 662 SMART blect_4 27 147 IPR001480 -
Stsc60577g00008 662 ProSiteProfiles Bulb-type lectin domain profile. 21 144 IPR001480 -
Stsc60577g00008 662 SUPERFAMILY alpha-D-mannose-specific plant lectins 60 212 IPR036426 -
Stsc60577g00008 662 ProSiteProfiles Protein kinase domain profile. 497 662 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60577g00008 662 SMART serkin_6 497 660 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60577g00008 662 Gene3D Phosphorylase Kinase; domain 1 459 573 - -
Stsc60577g00008 662 SUPERFAMILY Protein kinase-like (PK-like) 485 662 IPR011009 -
Stsc60577g00008 662 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 461 573 - -
Stsc60577g00008 662 Gene3D Transferase(Phosphotransferase) domain 1 574 662 - -
Stsc60577g00008 662 Gene3D - 17 145 IPR036426 -
Stsc60577g00008 662 Pfam Protein kinase domain 497 658 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60577g00008 662 ProSiteProfiles EGF-like domain profile. 285 321 IPR000742 -
Stsc60577g00008 662 ProSitePatterns Serine/Threonine protein kinases active-site signature. 618 630 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60577g00008 Stsc-Chr60577 20465 23014 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60577g00008 435 662 Receptor kinase-like Gene Family AT4G23190 53.712 2.50e-75 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc60577g00008 Pkinase 4.3e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60577g00008 - - ahf:112714694 1112.06