Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60577g00006 ATGGAGCTAACAAGACATTTCATACACTTAACAGTTTTGCTCTTAGTCTTATTATCCATCAGTGTTGCCACTTCCAGAGACACTATCACACCCTCACATCCCCTCAATGAACCAGAAACTTTAAGCTCCAACAATGGTATGTTCCACCTTGGATTCTTCACGCCAACAAACTACTCCTACCTCGGAATCTGGTACATGTCCAACACACCTGTGGTATGGGTTGCCAACAGAGACCAACCTATAAAGAATTCTTCTTCTGCTCTACTCCAAATATCTGAAGATGGAAACCTTGTTATCATGGATAATGCAAACAGCAATGGAATTCTTGTTTGGTCAACAAGCCTCTCCAATATTTCATCCAACACAACAGCGCAGCTTCTTAACACTGGCAACCTTGTGCTGCAAGAAAACACCACAGGAAGGATCCTTTGGCAAAGTTTCCAACACCCTACAAACACCTTGTTGCAGAAAATGGAGCTTAGCACAAATAAGTTCACTGGCAAGAAAGTAAAACTCACTTCTTGGAGAACTCCTCAGGATCCATCCATGGGAGAGTTCTCCTTGAGCCTCGAACGCCTTAGTATGCCTGAAGAGTTCGTCTGGAAGGGAGTTCAACCTTACTGGCGTAGCGGTCCGTGGAACGGTGTAACTTTTCTTGGAATACCTGGGAATAACATAAACAATCTTGATGGATTTTACTTGGATAGATCTTATGATGATAACGGCACTTACTATCTTTCTTTCAACTTTGCAAATCAGTCTTTGTTGTTGATCTGTGTGTTAACTGATGATGGAAACATTAATGACTATTATTGGGATTATGTGAAGAAAAATTGGTCAATTGCATGGATAGCTATCAACTCAGAGTGTGATGTGTATGGCAAGTGTGGAGCATCTGGAATATGTGATCGCACCAGTGAACCTATTTGTAGCTGCTTACCAGGGTTTGAACCAATGAATTCCTCTGAATGGAATAGACAAAATTGGAGTAGTGGTTGTATTAGGAAGAAAGCTCTGCAGTGTGAAGATAATGGGTTTGTGATGTTAGAGAATTCTAAGACAGCAGACTTTGCAGTTTGGTCCTCTCCTACTGAGTATGATTGCAGAACTCAGTGCATTCGAAACTGTTCTTGTGAAGCATATGCATATGATGCTGGTATTGGCTGCATGCTATGGGCTGGGAGCTTAATTGACATTCAAAGGTTCTCAACTGGAGGAACCGATCTTTATATTCGTGTTCCCAATTCAGACTCTGGTAAAAAGAAAAATACTGTCACAGTAATCATTGCAGTTACAGTCACTGTAGGAGTGATTGTCCTTGTGTCATGCATATTTATCTTGTGGAAAAGAACTTCAAGGAAAGATGTAGATAGAGCAAATTCAGAAAGTCAGGGCAGAGTCCAGAAAAATGAACTTCTTGAGCTTTCACAGTTTGAGTTTGAAAGGCTTGCTATAGCAACAAACAACTTTCACTTAAATAATAAGCTAGGACAAGGGGGTTTTGGACCAGTATATAAGGGTACATTAGAAGATGGGCAGGAAATAGCAGTTAAAAGGCTTTCAAGAGCATCTGGACAAGGGCAAGAAGAATTTATGAATGAGGTGTTGGTAATATCAAAGCTTCAACATCGAAATCTTGTCAGACTTCTTGGATGTTATATTGCTGAGAGATATTCTAACTCTTTTCTTCTAAATTTTAATGCCATTTCAGATCCATCTAAACAAGTTTTAAGTTGGGAAAAACGTTTTGCTATAATCGAAGGAATAGCTCGTGGTTTACTTTATCTTCATAGAGATTCTAGATTAAGAATTATACACAGAGATCTCAAGTTAAGCAATATATTACTTGATGGAGAATTAAATGCAAAAATTTCAGACTTTGGTATGGCAAAGATTTTTTGTCACACTGAAGATGAAGCTAATACTAGAAGGGTTGTCGGAACATTCGGTTATATGTCACCGGAGTATGTTATGGAAGGACTATTTTCAGAAAAATCTGATGTATTCAGTTTTGGTGTTTTGATATTGGAGATTGTTAGCAAGAGAAAAAATGCTAGTTTTTATGAGGATGCTGAATCTCTAAGCCTTATTGGATTTGCATGGAAATTGTGGAATGATGATAAGATTGCAGGTCTAATAGATGCAGAAATAGGAAATGTGAGTAGTGTTGCAGATATAATGAGGTGCATTCACATTGGACTTTTGTGTGTGCAAGAACTTGCAAGGGATAGGCCTACTATGACAGCAGTAATTTCAATGCTGAACAGTGAAACTGTTAATCTTGCTCCTCCAAAGCAGCCTGCATTCATGCATAGGCAGACAATGTTAGATACAGATTCTTCTTCTCATAGAACTAGAAGTGATGGATCACATTCCATCAATTATTTGAGCTTAACAAACATGCAAGGAAGATAG 2415 0.388 MELTRHFIHLTVLLLVLLSISVATSRDTITPSHPLNEPETLSSNNGMFHLGFFTPTNYSYLGIWYMSNTPVVWVANRDQPIKNSSSALLQISEDGNLVIMDNANSNGILVWSTSLSNISSNTTAQLLNTGNLVLQENTTGRILWQSFQHPTNTLLQKMELSTNKFTGKKVKLTSWRTPQDPSMGEFSLSLERLSMPEEFVWKGVQPYWRSGPWNGVTFLGIPGNNINNLDGFYLDRSYDDNGTYYLSFNFANQSLLLICVLTDDGNINDYYWDYVKKNWSIAWIAINSECDVYGKCGASGICDRTSEPICSCLPGFEPMNSSEWNRQNWSSGCIRKKALQCEDNGFVMLENSKTADFAVWSSPTEYDCRTQCIRNCSCEAYAYDAGIGCMLWAGSLIDIQRFSTGGTDLYIRVPNSDSGKKKNTVTVIIAVTVTVGVIVLVSCIFILWKRTSRKDVDRANSESQGRVQKNELLELSQFEFERLAIATNNFHLNNKLGQGGFGPVYKGTLEDGQEIAVKRLSRASGQGQEEFMNEVLVISKLQHRNLVRLLGCYIAERYSNSFLLNFNAISDPSKQVLSWEKRFAIIEGIARGLLYLHRDSRLRIIHRDLKLSNILLDGELNAKISDFGMAKIFCHTEDEANTRRVVGTFGYMSPEYVMEGLFSEKSDVFSFGVLILEIVSKRKNASFYEDAESLSLIGFAWKLWNDDKIAGLIDAEIGNVSSVADIMRCIHIGLLCVQELARDRPTMTAVISMLNSETVNLAPPKQPAFMHRQTMLDTDSSSHRTRSDGSHSINYLSLTNMQGR 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60577g00006 804 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 12 744 - -
Stsc60577g00006 804 SMART serkin_6 490 759 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60577g00006 804 Gene3D Transferase(Phosphotransferase) domain 1 565 766 - -
Stsc60577g00006 804 Pfam D-mannose binding lectin 71 176 IPR001480 -
Stsc60577g00006 804 ProSiteProfiles Protein kinase domain profile. 490 769 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60577g00006 804 ProSiteProfiles Bulb-type lectin domain profile. 26 147 IPR001480 -
Stsc60577g00006 804 FunFam Receptor-like serine/threonine-protein kinase SD1-8 21 147 - -
Stsc60577g00006 804 SUPERFAMILY Protein kinase-like (PK-like) 476 782 IPR011009 -
Stsc60577g00006 804 SMART blect_4 32 150 IPR001480 -
Stsc60577g00006 804 PIRSF SRK 1 804 IPR024171 GO:0004674
Stsc60577g00006 804 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 560 762 - -
Stsc60577g00006 804 Pfam Domain of unknown function (DUF3403) 756 804 IPR021820 GO:0004674
Stsc60577g00006 804 Gene3D Phosphorylase Kinase; domain 1 450 563 - -
Stsc60577g00006 804 Pfam PAN-like domain 341 399 IPR003609 -
Stsc60577g00006 804 Pfam Protein tyrosine and serine/threonine kinase 491 752 IPR001245 GO:0004672|GO:0006468
Stsc60577g00006 804 CDD PAN_AP_plant 339 414 - -
Stsc60577g00006 804 ProSitePatterns Serine/Threonine protein kinases active-site signature. 604 616 IPR008271 GO:0004672|GO:0006468
Stsc60577g00006 804 ProSiteProfiles PAN/Apple domain profile. 341 414 IPR003609 -
Stsc60577g00006 804 SMART ntp_6 341 413 IPR003609 -
Stsc60577g00006 804 Pfam S-locus glycoprotein domain 208 319 IPR000858 GO:0048544
Stsc60577g00006 804 SUPERFAMILY alpha-D-mannose-specific plant lectins 61 215 IPR036426 -
Stsc60577g00006 804 Gene3D - 20 148 IPR036426 -
Stsc60577g00006 804 CDD B_lectin 32 150 IPR001480 -
Stsc60577g00006 804 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 463 565 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60577g00006 Stsc-Chr60577 16318 19297 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60577g00006 416 799 Receptor kinase-like Gene Family AT4G05200 45.685 2.96e-107 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc60577g00006 PK_Tyr_Ser-Thr 4.6e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60577g00006 - - adu:107468469 1344.72