Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60577g00005 ATGGAGCACTACTACTTTCCCTTTCTTCTCTTATTATTACTTCATCCATATTTTGGCACTTCCTTAGACACCATCACCTCTTCTTATATCCTTAAGCCCCCTCAAACTTTAACCTCCACTGATGGCATCTTCCACCTTGGATTCTTCACCCCCACCACCAACTCATCTTCATCTTCCTATCTTGGAATCTGGTACATAAACAGCCCTCCTGTCGTCTGGGTTGCTAACAGAAACCAACCTATCACACCTCATGATGAAGGGATAGTCCTCAAGATATCCAAAGATGGAAACCTTGTTTTGATGGACACTGCACATAGTAATAACAAGATCCTTTGGTCAACAAATGTGTCAAACATAGCATCCCCCAACACCACAACTGCTCAGCTTCTCACCACCGGAAACCTTGTCTTGCAAGAAAACTCCACAGGTAAGATACTGTGGGAGAGTTTCCAACACCCCACAGACACTTTGCTGCAGAACATGAAGATTAGTGCTAACAGAATCACCGGCAAGAAAGTCAAGCTAACCTCATGGAGAACTCCTCATGATCCATCCATTGGAGACTTCTCTGTGAGCCTAGAACGCCTTAGTATCCCTGAAGCCTTCATCTGGAGAGGGAGTAGTCAACCTCACTGGAGAAGTGGCCCATGGAACGGTCAAATATTCATTGGGGTACCAGACATGATTGCAAACTATATTGATGGCTTTTACATGAGTGGAAAAGATGAAGAGAGCAATGGTACTTACTATCTTTCTTACAGCTATGCAAATCACAATCTAAAGATGTTTGCTTTAGCTTCTGATGGAAACTTAAATGAATACTACTGGGATTATTCAAAGAAGCAATGGTCCATGATGTGGTCAGTTATAAACACTGACTGTGGTGTTTATGGAAAGTGTGGAGTATTTGCAAGCTGTAACCCTAAAACTTCACCTATCTGCAGTTGCTTGAGAGGATATGAGCCTAGGAATGCAGAGGAGTGGAACAAACAAAACTGGAGCAGTGGTTGTGTGAGGAAGATACCTCTGCAGTGTGAGAGTGAGAGAGTCTCAAGTAGTAGTAATGAATCAGTAGCAGTGGGAGATGGGTTTGTGAAGATGGAGAATACTAAGGTTCCAGATTATGCTGAGTGGCTGTCTTCTATTGACTTTGACTGCAGAAGTGCTTGTTTGGGAAACTGTTCTTGCAAAGCATATGCTTATGATGCTGGCATTGGTTGTATGCTATGGACTGGAAACTTGATTGACATACAGAGATTCTCAATGGGAGGAACCGATCTTTACATACGTGTTCCCTCTTCTGAGCTTGATGAGCAGAAGAAGAAAAATCATGGCTCAGTGATCATTGCAGTTACAGTCTCAGTAGTAGGAACTATTGGGATTGTGAGTTGTGCCTTTATCCTGTGGAAAAGAAGAACTGCAATAGGAGAGAGAGCAAATTTCAGAATACCTACAATAAGCAGGATAAAATACCCGGAGCTTTCTCAATTTGAGTTTGAGAAGCTTGCAATTGCAACAAACAACTTTCACTTAACAAATAAGCTGGGAGAAGGAGGTTTTGGACTAGTATACAGGGGAACATTGAAAGATGGACAAGAAATAGCAGTTAAAAGACTTTCAAGTGCATCATGTCAGGGAGTAGAAGAATTTATGAATGAGGTGTTGGTAATATCAAAGCTTCAACATAGAAATCTTGTCAGACTTCTTGGATGCTGTATAGAAAGAAATGAGAAGATTTTGGTGTATGAATACATGCCAAATAAAAGTTTAGATGCATATTTGTTTGGATTTAAGCAAGAGCTAAATTGGGAAAAACGTTTTCATATTATTGAAGGAATCGCTCGAGGCTTGCTTTATCTTCATAGAGACTCAAGACTAAGAATTATCCATAGAGATTTGAAGTTAAGCAATGTATTACTTGATGAAGAGCTAAATCCAAAGATTTCAGATTTTGGCATGGCAAAGATTTTTGGTCACACTGAAAATGAAGCAAATACTACCAGAGTTGTTGGAACATAG 2019 0.4047 MEHYYFPFLLLLLLHPYFGTSLDTITSSYILKPPQTLTSTDGIFHLGFFTPTTNSSSSSYLGIWYINSPPVVWVANRNQPITPHDEGIVLKISKDGNLVLMDTAHSNNKILWSTNVSNIASPNTTTAQLLTTGNLVLQENSTGKILWESFQHPTDTLLQNMKISANRITGKKVKLTSWRTPHDPSIGDFSVSLERLSIPEAFIWRGSSQPHWRSGPWNGQIFIGVPDMIANYIDGFYMSGKDEESNGTYYLSYSYANHNLKMFALASDGNLNEYYWDYSKKQWSMMWSVINTDCGVYGKCGVFASCNPKTSPICSCLRGYEPRNAEEWNKQNWSSGCVRKIPLQCESERVSSSSNESVAVGDGFVKMENTKVPDYAEWLSSIDFDCRSACLGNCSCKAYAYDAGIGCMLWTGNLIDIQRFSMGGTDLYIRVPSSELDEQKKKNHGSVIIAVTVSVVGTIGIVSCAFILWKRRTAIGERANFRIPTISRIKYPELSQFEFEKLAIATNNFHLTNKLGEGGFGLVYRGTLKDGQEIAVKRLSSASCQGVEEFMNEVLVISKLQHRNLVRLLGCCIERNEKILVYEYMPNKSLDAYLFGFKQELNWEKRFHIIEGIARGLLYLHRDSRLRIIHRDLKLSNVLLDEELNPKISDFGMAKIFGHTENEANTTRVVGT 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60577g00005 672 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 479 584 - -
Stsc60577g00005 672 SUPERFAMILY alpha-D-mannose-specific plant lectins 61 184 IPR036426 -
Stsc60577g00005 672 SUPERFAMILY Protein kinase-like (PK-like) 495 672 IPR011009 -
Stsc60577g00005 672 Pfam S-locus glycoprotein domain 212 323 IPR000858 GO:0048544
Stsc60577g00005 672 SMART serkin_6 509 670 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60577g00005 672 Pfam D-mannose binding lectin 71 179 IPR001480 -
Stsc60577g00005 672 CDD B_lectin 28 153 IPR001480 -
Stsc60577g00005 672 ProSiteProfiles Bulb-type lectin domain profile. 22 150 IPR001480 -
Stsc60577g00005 672 ProSiteProfiles PAN/Apple domain profile. 345 432 IPR003609 -
Stsc60577g00005 672 SMART ntp_6 359 431 IPR003609 -
Stsc60577g00005 672 CDD PAN_AP_plant 342 432 - -
Stsc60577g00005 672 ProSiteProfiles Protein kinase domain profile. 509 672 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60577g00005 672 SMART blect_4 28 153 IPR001480 -
Stsc60577g00005 672 ProSitePatterns Serine/Threonine protein kinases active-site signature. 628 640 IPR008271 GO:0004672|GO:0006468
Stsc60577g00005 672 Gene3D Phosphorylase Kinase; domain 1 485 584 - -
Stsc60577g00005 672 Gene3D Transferase(Phosphotransferase) domain 1 585 672 - -
Stsc60577g00005 672 Pfam PAN-like domain 361 417 IPR003609 -
Stsc60577g00005 672 ProSitePatterns Protein kinases ATP-binding region signature. 515 537 IPR017441 GO:0005524
Stsc60577g00005 672 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 585 672 - -
Stsc60577g00005 672 Pfam Protein tyrosine and serine/threonine kinase 510 663 IPR001245 GO:0004672|GO:0006468
Stsc60577g00005 672 Gene3D - 17 151 IPR036426 -
Stsc60577g00005 672 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 9 662 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60577g00005 Stsc-Chr60577 13225 15680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60577g00005 447 672 Receptor kinase-like Gene Family AT4G23190 50.655 2.77e-72 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc60577g00005 PK_Tyr_Ser-Thr 1.1e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60577g00005 - - adu:107468469 1166.76