Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60576g00007 ATGGATGGAACTGAGGATGATGATGCAAGGTATCCCTCTAACCCATATGGTGTTAATCACCAGGGTTATGGCTATCTGGGTCAGAGGAGACTTCCGGTTCGGACTTCGCCGTATCCTCAGCCAGTTGCAAGTGATTTTGTGGAGCATAATGATAATGAGGAGGAGGAGGATGAAGAAGATGAAGATGAAGTGCAGATAATAGAAGAAGAACATGATGATGATGATGTTGATTCCCAAAGGAATGCTGTCCCTGACAATGCTGAGGAAGGTGATGATGAAGACAGGGATGGGGATGAAATTGGTGGCAACAATGATGATGTTGGCGCGGAGGAGGAGGATGAGGATGAGGAAGATGATGAGGGTGATGCTAAGCCAAGAGTTTATAGCATGAAGGATGATGATGATATAGAGTGGCATCCGAAAAAGCGAAAGCTCAAGAGTTTGATTTCAGCTTATGAATTCGCACCCCGGGTACCAGCACCATCGGCTGCAGCTCCTTCGACCCCTAAACCATCTTCTGGTGGTAGGAACTCCCTTACTGATTGGACCGAGTGCGAGACATTCCTTCTTCTTGATGCTTGGGGTGATAAGTTTCTTCAACATGGGAGGAAGAGTCTTCGATCTGAGGAATGGCAAGAAGTTGCAGAGAAGGTATCAGAAGTTTCAAAGATTGAAAGGAAAGATGCTCAGTGTAGAAACCGGTTAGATACATTGAAGAAGAAGTACAAGAAGGAGAAGGCAAAATTAGAGAAAATGGGTGGTGGAACTTGCAAGTGGGTTTATTTTCAGAGGATGGATAAGCTAATGTCTACTCCGGTGCAGCAATCAGGTCTGTCATGTGGTTTGGACTCCGGCGAGTATGTGTTTACGAATCCTCGAGTTTATTTGAACCGCGCAAATGGGTTGGATCAGATGAGGGATAGTCCTGGGAATTCTGAATCCATTGGTGAAGAAGGTTCAAGTGGACATAAATATAAGAAAAGAAGGTATGCGAGAACTGGATGGATGGATCTTCAATTGTGCTCAATGCCTGTCTAG 1038 0.4509 MDGTEDDDARYPSNPYGVNHQGYGYLGQRRLPVRTSPYPQPVASDFVEHNDNEEEEDEEDEDEVQIIEEEHDDDDVDSQRNAVPDNAEEGDDEDRDGDEIGGNNDDVGAEEEDEDEEDDEGDAKPRVYSMKDDDDIEWHPKKRKLKSLISAYEFAPRVPAPSAAAPSTPKPSSGGRNSLTDWTECETFLLLDAWGDKFLQHGRKSLRSEEWQEVAEKVSEVSKIERKDAQCRNRLDTLKKKYKKEKAKLEKMGGGTCKWVYFQRMDKLMSTPVQQSGLSCGLDSGEYVFTNPRVYLNRANGLDQMRDSPGNSESIGEEGSSGHKYKKRRYARTGWMDLQLCSMPV 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60576g00007 345 MobiDBLite consensus disorder prediction 157 179 - -
Stsc60576g00007 345 MobiDBLite consensus disorder prediction 49 75 - -
Stsc60576g00007 345 Gene3D - 182 244 - -
Stsc60576g00007 345 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 162 321 IPR044823 -
Stsc60576g00007 345 Pfam Myb/SANT-like DNA-binding domain 181 268 IPR044822 -
Stsc60576g00007 345 MobiDBLite consensus disorder prediction 304 318 - -
Stsc60576g00007 345 MobiDBLite consensus disorder prediction 1 140 - -
Stsc60576g00007 345 MobiDBLite consensus disorder prediction 87 121 - -
Stsc60576g00007 345 MobiDBLite consensus disorder prediction 122 140 - -
Stsc60576g00007 345 MobiDBLite consensus disorder prediction 302 323 - -
Stsc60576g00007 345 Coils Coil 221 252 - -
Stsc60576g00007 345 Coils Coil 50 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60576g00007 Stsc-Chr60576 23645 25057 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60576g00007 167 279 Trihelix Transcription Factor Family AT3G14180 41.667 8.09e-24 99.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Stsc60576g00007 Myb_DNA-bind_4 1.5e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60576g00007 - - tcc:18595893 325.479