Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60576g00005 ATGCAAGTGTGCATTGCTGGCTTCAAAAAGGGACAGGTAAAAGTATTGGCTCACTCCTATGACAGGTCTCTGGGTGGTAGGGATTTTGATGAGGTTCTGTTCCATCACTTTGCTGCAAAATTTAAGACAGAGTACAAAATTGATGTTTTCCAGAATGCTCGGGCTTGTTTGAGGCTTAGGGCTGCTTGTGAGAAGCTGAAGAAGGTGCTTAGTGCAAATCCTGAGGCACCTCTGAATATTGAATGCTTAATGGATGAAAAAGATGTCAGAGGCTTCATCAAGCGCGATGAGTTTGAGCAACTAAGTCTTCCAATTTTGGAACGTGTGAAGGGACCTTTGGAGAAGGCACTTGCTGAAGCAAATCTAACAATTGAAAATGTTCACATGGTTGAGGTGGTTGGTTCAGGATCTCGTGTACCAGCTATAAATAAAATATTGACAGATTTCTTCAAAAAGGAGCCTAGACGGACAATGAATGCTAGTGAGTGTGTTGCTAAGGGTTGTGCGTTGCAATGTGCAATTCTTAGTCCAACTTTTAAAGTACGAGAGTTTCAGGTCAACGAAAGTTTTCCTTTTTCAATTTCCCTTTCATGGAAAGGTTCTGGACCAGATGCACAGGGAAGTAGTGGGTCAGATAATCAGCAAAGTAGCCTTGTTTTCCCCAAGGGCAATCCCATTCCAAGTATGAAGGCATTGACATTCTACAGGCCAGGAACATTCTCTATTGATGTACAATATAGTGATGTGAGTGGACTGCAAACACCTGCCAAGATCAGTACATACACTATTGGTCCTTTCCAAACTACAAAATCTGAAAGAGCAAAAGTTAAAGTGAGAGTTCGTTTGAATTTGCATGGGATTGTATCTGTTGATTCTGCAACTCTACTGGAAGAGGAAGAAGTTGATGTTCCGGTTTCCAAAGAATCAGCTGCAGAAAATACCAAGATGGATACTGATGAAGCCCCTGCTGATGGTGCTGCTCCTCCAACCTCCAATGACTCTGATGTTAACATGCAAGATGCGAAGGCTAATACTGATACCACTGGACCTGAAAATGGAAGTCTTGAGACTGGAGAAAAGCCTGTACAAATGGACACCGATACAAAGGCTCCGAAGAAAAAGGTCAAGAAAGCAAACATTCCTATAGCAGAGGTGGTTTATGGAGCTCTGGAACATTTGGATCTACAGAAAGCTGTAGAGAAGGAGTTTGAAATGGCTTTGCAAGATCGCGTGATGGAAGAAACAAAAGACAAGAAAAATGCTGTTGAGGCTTATGTTTATGAAATGCGGAACAAGCTTAATGACAAATATCAAGATTTTGTCACTGCTCCAGAGAGGGAAGATTTTACTGCTAAACTTCAGCAGGTGGAAGACTGGCTATATGAGGATGGTGAAGATGAAACTAAAGGCGTATATATTGCAAAACTTGAAGAACTTAAAAAGCAAGGTGATCCTATTGAAGCTCGTTATAGAGAACACGCGGAGAGGGGCACAGTAATTGATCAGCTCAACTATTGTGTAAATAGTTACAGAGAAGCTGCAATGTCAAGTGATCCCAAATTTGATCACATTGACATCAATGACAAGCAGAAGGTCCTAAATGAGTGTGTTGAGGCTGAAAACTGGCTAAGAGAGAAGAAGCAACAGCAGGACTCACTCCCAAAACATGCCAACCCTGTACTCTTGTCTGCCGACATAAGAAAGAAAGCGGAGGCTGTTGACAGGCTCTGCAAGCCAATTATGACGAAGCCAAGACCAGCCAAGCCAGCTACTCCTCCACCACAAGGAACCCCACCTCGGGAGGGTGAGCAGCAGCAACCACAGGGGGGTGCAAGTGCGAATAATAACGAGAATGACATCCCAGCAGCATCCACCGAACCGATGGAGACTGAGAATAAGTCACAGAACACAGGGTCTTCATAA 1923 0.4327 MQVCIAGFKKGQVKVLAHSYDRSLGGRDFDEVLFHHFAAKFKTEYKIDVFQNARACLRLRAACEKLKKVLSANPEAPLNIECLMDEKDVRGFIKRDEFEQLSLPILERVKGPLEKALAEANLTIENVHMVEVVGSGSRVPAINKILTDFFKKEPRRTMNASECVAKGCALQCAILSPTFKVREFQVNESFPFSISLSWKGSGPDAQGSSGSDNQQSSLVFPKGNPIPSMKALTFYRPGTFSIDVQYSDVSGLQTPAKISTYTIGPFQTTKSERAKVKVRVRLNLHGIVSVDSATLLEEEEVDVPVSKESAAENTKMDTDEAPADGAAPPTSNDSDVNMQDAKANTDTTGPENGSLETGEKPVQMDTDTKAPKKKVKKANIPIAEVVYGALEHLDLQKAVEKEFEMALQDRVMEETKDKKNAVEAYVYEMRNKLNDKYQDFVTAPEREDFTAKLQQVEDWLYEDGEDETKGVYIAKLEELKKQGDPIEARYREHAERGTVIDQLNYCVNSYREAAMSSDPKFDHIDINDKQKVLNECVEAENWLREKKQQQDSLPKHANPVLLSADIRKKAEAVDRLCKPIMTKPRPAKPATPPPQGTPPREGEQQQPQGGASANNNENDIPAASTEPMETENKSQNTGSS 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60576g00005 640 MobiDBLite consensus disorder prediction 601 640 - -
Stsc60576g00005 640 MobiDBLite consensus disorder prediction 585 600 - -
Stsc60576g00005 640 MobiDBLite consensus disorder prediction 301 372 - -
Stsc60576g00005 640 Gene3D - 156 173 - -
Stsc60576g00005 640 FunFam Heat shock 70 kDa protein 4 390 500 - -
Stsc60576g00005 640 SUPERFAMILY Actin-like ATPase domain 3 175 IPR043129 -
Stsc60576g00005 640 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 501 590 IPR029048 -
Stsc60576g00005 640 Gene3D - 496 584 IPR029048 -
Stsc60576g00005 640 PANTHER HSC70CB, ISOFORM G-RELATED 1 630 - -
Stsc60576g00005 640 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 392 490 IPR029048 -
Stsc60576g00005 640 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 182 388 IPR029047 -
Stsc60576g00005 640 FunFam Heat shock 70 kDa protein 4 25 108 - -
Stsc60576g00005 640 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 179 423 IPR029047 -
Stsc60576g00005 640 Gene3D - 390 495 IPR029048 -
Stsc60576g00005 640 Gene3D Actin; Chain A, domain 4 25 108 - -
Stsc60576g00005 640 MobiDBLite consensus disorder prediction 330 354 - -
Stsc60576g00005 640 MobiDBLite consensus disorder prediction 577 640 - -
Stsc60576g00005 640 Pfam Hsp70 protein 2 491 IPR013126 GO:0005524|GO:0140662
Stsc60576g00005 640 Gene3D - 2 155 - -
Stsc60576g00005 640 MobiDBLite consensus disorder prediction 301 319 - -
Stsc60576g00005 640 FunFam Heat shock 70 kDa protein 14 182 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60576g00005 Stsc-Chr60576 16798 20572 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60576g00005 3 494 Calmodulin-binding Proteins AT3G12580 26.400 1.25e-34 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60576g00005 K09489 - qsa:O6P43_027794 980.704